Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QJP76_RS20050 Genome accession   NZ_CP124455
Coordinates   4067515..4068723 (+) Length   402 a.a.
NCBI ID   WP_001161846.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0193     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4062515..4073723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP76_RS20035 (QJP76_20035) - 4063030..4064706 (+) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -
  QJP76_RS20040 (QJP76_20040) kdsB 4064716..4065456 (+) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QJP76_RS20045 (QJP76_20045) - 4065453..4067480 (+) 2028 WP_042198079.1 capsular polysaccharide biosynthesis protein -
  QJP76_RS20050 (QJP76_20050) kpsS 4067515..4068723 (+) 1209 WP_001161846.1 capsular biosynthesis protein Regulator
  QJP76_RS20055 (QJP76_20055) - 4068811..4069797 (-) 987 WP_042198082.1 hypothetical protein -
  QJP76_RS20060 (QJP76_20060) - 4069916..4073425 (-) 3510 WP_000836184.1 hypothetical protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 47943.54 Da        Isoelectric Point: 10.2401

>NTDB_id=756766 QJP76_RS20050 WP_001161846.1 4067515..4068723(+) (kpsS) [Escherichia coli strain AVS0193]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGLRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGDRVRKQIKVK
KL

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=756766 QJP76_RS20050 WP_001161846.1 4067515..4068723(+) (kpsS) [Escherichia coli strain AVS0193]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCCTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGTTTTGGTGACTGTCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGCTCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGGGAACGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGATAGAGTAAGAAAACAAATAAAAGTAAAA
AAATTATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

97.264

0.386