Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OQ460_RS21875 Genome accession   NZ_CP110853
Coordinates   4806714..4808081 (-) Length   455 a.a.
NCBI ID   WP_410019260.1    Uniprot ID   -
Organism   Pseudomonas sp. 16FHM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4801714..4813081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ460_RS21860 (OQ460_21795) yjiA 4803016..4803975 (-) 960 WP_410019258.1 GTPase -
  OQ460_RS21865 (OQ460_21800) - 4804150..4804347 (-) 198 WP_084376418.1 YbdD/YjiX family protein -
  OQ460_RS21870 (OQ460_21805) - 4804363..4806429 (-) 2067 WP_410019259.1 carbon starvation CstA family protein -
  OQ460_RS21875 (OQ460_21810) radA 4806714..4808081 (-) 1368 WP_410019260.1 DNA repair protein RadA Machinery gene
  OQ460_RS21880 (OQ460_21815) - 4808119..4808658 (-) 540 WP_410019261.1 ankyrin repeat domain-containing protein -
  OQ460_RS21885 (OQ460_21820) - 4808716..4810245 (-) 1530 WP_410022075.1 catalase -
  OQ460_RS21890 (OQ460_21825) mscL 4810545..4810961 (+) 417 WP_410019262.1 large-conductance mechanosensitive channel protein MscL -
  OQ460_RS21895 (OQ460_21830) - 4811079..4811855 (-) 777 WP_410019263.1 ferredoxin--NADP reductase -
  OQ460_RS21900 (OQ460_21835) - 4812346..4813056 (+) 711 WP_410019264.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48727.23 Da        Isoelectric Point: 7.1317

>NTDB_id=756661 OQ460_RS21875 WP_410019260.1 4806714..4808081(-) (radA) [Pseudomonas sp. 16FHM2]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAPPSGRSGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIESIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=756661 OQ460_RS21875 WP_410019260.1 4806714..4808081(-) (radA) [Pseudomonas sp. 16FHM2]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCTGGCCAATGCGGTGAGTG
TGGCGCGTGGAACACCCTCACTGAAACCATGGTGGAAAGCGGCGGCGCAGCGCCACCCAGCGGTCGTTCCGGCTGGACGG
GCCAACAAGCCCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATTCCGCGTTTTTCTACTGCATCCGGTGAGCTC
GATCGAGTGCTCGGCGGCGGTCTGGTAGACGGTTCGGTGGTATTGATCGGCGGCGACCCGGGCATCGGTAAATCCACCAT
CCTGCTGCAAACCCTGTGCAGTATCGCCAGCCGCATGCCGGCGCTGTATGTCACAGGTGAGGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGCTTGCCACAGGACAAGCTGCGGGTCATGACCGAAACCTGCATCGAGAGCATCATCGCC
ACCGCCCGCCTGGAAAAGCCCAAGGTCATGGTGATCGATTCGATCCAGACGATTTTTACCGAACAACTGCAATCCGCTCC
CGGCGGCGTTTCCCAGGTGCGGGAGAGTGCCGCACTGTTGGTGCGTTACGCCAAGCAAAGTGGCACGGCGATTTTCCTGG
TCGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGCCCGCGGGTGCTGGAGCATATGGTTGACACCGTGCTGTATTTCGAA
GGGGAATCGGACGGTCGCCTGCGACTGCTGCGAGCGGTGAAAAACCGTTTCGGCGCGGTCAACGAGCTGGGTGTGTTCGC
CATGACCGACCGGGGCCTGAAAGAGGTCTCCAACCCGTCAGCGATTTTTCTTACCCGGGCTCAGGAAGAAGTACCGGGCA
GTGTGGTGATGGCGACGTGGGAAGGCACTCGGCCGATGCTGGTAGAAGTCCAGGCACTGGTGGATGACAGCCACCTGGCC
AATCCGCGCCGCGTGACCCTTGGCCTGGACCAGAATCGCCTGGCGATGTTGCTGGCGGTCCTGCATCGCCACGGCGGCAT
TCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGATCTGGCCTTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAATCGGCCGTTGCCCCATGACCTGCTGGTATTTGGTGAAGTGGGTCTGTCGGGC
GAGGTGCGCCCGGTGCCCAGCGGCCAGGAGCGTCTCAAGGAAGCGGCCAAGCATGGCTTCAAGCGGGCCATCGTGCCCAA
AGGCAACGCACCGAAAGAGGCGCCGCCGGGGTTGCAGGTGATTGCGGTGACACGCCTGGAACAGGCATTGGATGCTTTGT
TCGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468