Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OQ460_RS02910 Genome accession   NZ_CP110853
Coordinates   627505..628845 (+) Length   446 a.a.
NCBI ID   WP_410021908.1    Uniprot ID   -
Organism   Pseudomonas sp. 16FHM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622505..633845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ460_RS02890 (OQ460_02885) pilM 625092..625745 (+) 654 WP_410020262.1 type IV pilus biogenesis protein PilM -
  OQ460_RS02895 (OQ460_02890) - 625745..626296 (+) 552 WP_410020263.1 PilN domain-containing protein -
  OQ460_RS02900 (OQ460_02895) - 626293..626913 (+) 621 WP_410020264.1 type 4a pilus biogenesis protein PilO -
  OQ460_RS02905 (OQ460_02900) - 626910..627434 (+) 525 WP_410020265.1 pilus assembly protein PilP -
  OQ460_RS02910 (OQ460_02905) pilQ 627505..628845 (+) 1341 WP_410021908.1 type IV pilus secretin PilQ Machinery gene
  OQ460_RS02915 (OQ460_02910) aroK 628850..629368 (+) 519 WP_410020266.1 shikimate kinase AroK -
  OQ460_RS02920 (OQ460_02915) aroB 629516..630616 (+) 1101 WP_410020267.1 3-dehydroquinate synthase -
  OQ460_RS02925 (OQ460_02920) - 630627..632201 (+) 1575 WP_410020268.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48464.43 Da        Isoelectric Point: 5.1410

>NTDB_id=756647 OQ460_RS02910 WP_410021908.1 627505..628845(+) (pilQ) [Pseudomonas sp. 16FHM2]
MAKAVPNRVDLIQLPPPGGAPMNAGRSSFTGDKLSLNFQNIEVRAVLQQIADVAGLNLVAADDVGGSITLRLKDVPWDQA
LDLVLQAKGLDKRVRANVLLVASAKELAARELLALESRKQMTELAPLRRELLQVNYANAAQLAKLFQSVTDLEGAREERG
SVAVDDRTNNIIVYQTQERLDELRHIVAQLDVPVRQVMIEARIVEANVDYDKSMGVRWGGLIQNKGNWRGSGINKGAAGD
GEQPESPPSSPFVDLGAVNGSSGLGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSS
GATSVSFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLNDVPPIKKNEVKAKVLVKDGETIVIGGVFSNTQSKVV
DKVPFLGDLPYLGRLFRRDVVSDKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=756647 OQ460_RS02910 WP_410021908.1 627505..628845(+) (pilQ) [Pseudomonas sp. 16FHM2]
ATGGCCAAGGCCGTGCCCAATCGGGTCGATCTGATTCAACTTCCACCGCCCGGTGGTGCGCCAATGAATGCGGGGCGCAG
TTCGTTTACCGGCGATAAATTATCCCTCAACTTCCAGAACATCGAAGTCCGTGCCGTCTTGCAGCAGATTGCCGATGTTG
CCGGCCTCAACCTGGTGGCCGCTGACGATGTGGGCGGTTCGATAACCTTGCGCCTCAAGGATGTCCCCTGGGATCAGGCC
TTGGACCTAGTGCTGCAGGCCAAGGGGCTGGACAAACGGGTGAGAGCCAACGTGTTGCTGGTGGCATCGGCGAAGGAGCT
GGCTGCACGTGAATTGCTGGCGCTGGAGTCGCGCAAGCAAATGACTGAGCTGGCACCGCTGCGTCGCGAGTTGCTGCAAG
TCAATTACGCCAATGCGGCGCAATTGGCCAAGTTGTTCCAGTCGGTGACCGATCTTGAGGGCGCGCGGGAGGAGCGTGGT
TCGGTGGCGGTGGATGACCGCACCAATAACATCATTGTCTACCAGACCCAGGAACGCCTGGACGAGTTGCGGCATATCGT
TGCGCAGCTGGATGTCCCGGTTCGCCAGGTGATGATCGAAGCGCGGATCGTCGAAGCCAACGTCGATTACGACAAGAGTA
TGGGGGTGCGTTGGGGTGGGCTGATTCAGAACAAAGGCAATTGGCGCGGTAGCGGCATCAATAAAGGCGCTGCGGGGGAT
GGCGAGCAGCCAGAGAGCCCGCCCAGTTCGCCGTTTGTGGATCTTGGGGCGGTCAATGGTTCGTCTGGCCTGGGTATCGC
ATTTATCACCGACAATGTGTTGCTGGACCTGGAACTGACGGCGATGGAAAAAACCGGCAACGGGGAAATTGTCTCGCAGC
CCAAAGTGGTCACATCCGACAAGGAAACTGCCCGAATCCTTAAAGGCACCGAGATTCCCTATCAGGAGTCCAGTTCCAGT
GGTGCGACCTCAGTGTCCTTCAAGGAAGCCTCGTTGTCCCTGGAAGTGACACCGCAGATCACTCCTGACGACCGGGTAAT
CATGGAGGTCAAGGTCACCAAGGATGAGCCCGACTACCTGAACAAGCTCAACGACGTACCGCCGATCAAGAAAAACGAGG
TGAAAGCCAAGGTGTTGGTCAAGGATGGCGAGACCATCGTCATTGGCGGAGTTTTCTCCAATACCCAAAGCAAGGTCGTA
GATAAAGTGCCATTTCTGGGCGATCTGCCGTATCTTGGCCGCCTTTTCAGGCGCGATGTTGTCTCGGACAAAAAATCCGA
GCTGCTGGTATTCCTGACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(131-196)

Secretin and TonB N terminus short domain (STN)

(58-102)

Bacterial type II and III secretion system protein (Secretin)

(281-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.689

98.206

0.704
  comQ Acinetobacter baylyi ADP1

40.795

100

0.437
  pilQ Acinetobacter baumannii strain A118

41.72

100

0.435
  pilQ Acinetobacter baumannii D1279779

41.72

100

0.435
  pilQ Legionella pneumophila strain ERS1305867

43.81

94.17

0.413
  pilQ Vibrio campbellii strain DS40M4

43.499

94.843

0.413
  pilQ Legionella pneumophila strain Lp02

43.365

94.619

0.41
  pilQ Vibrio cholerae strain A1552

43.614

93.049

0.406
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.614

93.049

0.406