Detailed information NTG0756646

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP94_RS08290
• Genome accession: NZ_CP124442
• Coordinates: 1636598..1637590 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0196
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1631598..1642590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP94_RS08270 (QJP94_08270)	ygbM	1632236..1633012 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP94_RS08275 (QJP94_08275)	ygbN	1633101..1634465 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP94_RS08280 (QJP94_08280)	-	1634608..1635651 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP94_RS08285 (QJP94_08285)	-	1635876..1636427 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP94_RS08290 (QJP94_08290)	rpoS	1636598..1637590 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP94_RS08295 (QJP94_08295)	nlpD	1637653..1638747 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP94_RS08300 (QJP94_08300)	pcm	1638932..1639558 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP94_RS08305 (QJP94_08305)	surE	1639552..1640313 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP94_RS08310 (QJP94_08310)	truD	1640294..1641343 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP94_RS08315 (QJP94_08315)	ispF	1641340..1641819 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP94_RS08320 (QJP94_08320)	ispD	1641819..1642529 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=756646 QJP94_RS08290 WP_000081550.1 1636598..1637590(-) (rpoS) [Escherichia coli strain AVS0196]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=756646 QJP94_RS08290 WP_000081550.1 1636598..1637590(-) (rpoS) [Escherichia coli strain AVS0196]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715