Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KI241_RS19320 Genome accession   NZ_AP021902
Coordinates   4448864..4451110 (-) Length   748 a.a.
NCBI ID   WP_212802890.1    Uniprot ID   -
Organism   Pseudomonas sp. Cab53     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4443864..4456110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI241_RS19285 (PHLH5_38730) murB 4444246..4445265 (-) 1020 WP_047736431.1 UDP-N-acetylmuramate dehydrogenase -
  KI241_RS19290 (PHLH5_38740) - 4445262..4445726 (-) 465 WP_042728813.1 low molecular weight protein-tyrosine-phosphatase -
  KI241_RS19295 (PHLH5_38750) kdsB 4445726..4446490 (-) 765 WP_212802888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KI241_RS19300 (PHLH5_38760) - 4446487..4446672 (-) 186 WP_042728811.1 Trm112 family protein -
  KI241_RS19305 (PHLH5_38770) lpxK 4446698..4447708 (-) 1011 WP_212802889.1 tetraacyldisaccharide 4'-kinase -
  KI241_RS19310 (PHLH5_38780) - 4447708..4448136 (-) 429 WP_042728809.1 biopolymer transporter ExbD -
  KI241_RS19315 (PHLH5_38790) exbB 4448133..4448768 (-) 636 WP_161796100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KI241_RS19320 (PHLH5_38800) comA 4448864..4451110 (-) 2247 WP_212802890.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KI241_RS19325 (PHLH5_38810) - 4451255..4451770 (+) 516 WP_042728806.1 DUF2062 domain-containing protein -
  KI241_RS19330 (PHLH5_38820) - 4451864..4452643 (-) 780 WP_042728805.1 ABC transporter permease -
  KI241_RS19335 (PHLH5_38830) - 4452640..4453572 (-) 933 WP_042728804.1 ABC transporter ATP-binding protein -
  KI241_RS19340 (PHLH5_38840) - 4453705..4454328 (-) 624 WP_042728803.1 glutathione S-transferase -
  KI241_RS19345 (PHLH5_38850) - 4454375..4455034 (-) 660 WP_212802891.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81079.06 Da        Isoelectric Point: 10.1158

>NTDB_id=75657 KI241_RS19320 WP_212802890.1 4448864..4451110(-) (comA) [Pseudomonas sp. Cab53]
MRTGLVALALGLVAPVFFPALPPPWLMVALPVLALMAVPFRTYPLGFFLGGLAWACLSAQCALDDRLPAALEGETRWVEG
RVVGLPQYSDGVVRFELADAHGRRDRLPALMRLAWFGGPPVSSGERWRLAVKLKRPAGLLNPHGFDYQAWLLSRGIGATG
TIKDGRLLQPAQGAWRDGVRQALARVDAQGRSGALMALVLGDGAGLSREDWRVLQDTGTVHLLVISGQHIGLLAGLVYLM
VAGAARHGLWPARLPWLPWACGLAFMAALSYGLLAGFEVPVRRACAMIGLVLLWRLRFKPAASWWAWLLAFDGVLLFDPL
ACLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVALGLCPLLLILGLPVSLSGPLANLLAVPWISLLVLPPAL
LGTLLLPVPFVGEGLLWIAGGLLDVWFRGLAWVAGQLPAWTPAAVPPWALGIAALGAFVLLLPKGVPLRLLGWPMLSLMV
FAPRENLPHGQAEIWQLDVGQGLAVLVRTHGHALLYDAGPRWGDADAGERVVLPTLRKLGVRELDLMLLSHADADHAGGA
LAVRNGLPTRQLISGDPDALPEALHAGPCDSGQRWEWDGVGFALWQWSSAEDSNQKSCVLRVEAGGERLLLTGDIDRHAE
RALLDGPLAVPIHWLAAPHHGSRSSSSMALLARLKPHSVLISRGQGNAFGHPHPQVMARYRRAGMTIYDSAEQGAIRLQL
GAFARPRTEAGHRRYWRDPLPAGPPGRH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=75657 KI241_RS19320 WP_212802890.1 4448864..4451110(-) (comA) [Pseudomonas sp. Cab53]
ATGCGCACAGGATTGGTCGCGCTTGCGCTGGGGCTGGTGGCCCCGGTTTTTTTCCCGGCGTTGCCGCCGCCGTGGCTGAT
GGTGGCGCTGCCGGTGCTGGCACTGATGGCCGTGCCGTTTCGAACCTACCCGCTGGGCTTCTTCCTGGGCGGATTGGCCT
GGGCCTGTCTGTCGGCGCAGTGTGCGCTGGACGATCGGTTGCCTGCCGCGCTGGAGGGAGAAACCCGTTGGGTCGAAGGG
CGTGTCGTCGGCTTGCCGCAATACAGCGACGGCGTGGTGCGCTTCGAACTGGCCGATGCCCATGGTCGTCGCGACCGGTT
GCCGGCGTTGATGCGCCTCGCCTGGTTCGGTGGGCCGCCGGTCAGCAGTGGCGAGCGTTGGCGATTGGCGGTCAAGCTCA
AGCGGCCCGCCGGGCTGCTGAACCCTCACGGTTTCGACTATCAGGCCTGGCTGTTGAGCCGGGGCATCGGCGCCACCGGA
ACCATCAAGGACGGTCGCCTGCTGCAGCCAGCTCAGGGCGCTTGGCGTGACGGGGTGCGCCAGGCGCTGGCGCGGGTCGA
TGCCCAGGGCCGCTCCGGTGCGCTGATGGCCTTGGTGCTGGGGGATGGTGCCGGGTTGAGCCGCGAAGACTGGCGGGTGT
TGCAAGACACCGGCACGGTTCATCTGCTGGTGATCTCCGGGCAACACATTGGCCTGCTCGCCGGCCTGGTGTACCTGATG
GTGGCGGGTGCGGCGCGCCATGGCCTGTGGCCGGCAAGGCTGCCATGGTTGCCTTGGGCCTGCGGCCTGGCCTTCATGGC
GGCGCTGAGCTACGGCTTGCTGGCCGGGTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGTTGCTGT
GGCGCTTGCGCTTCAAGCCTGCGGCCTCCTGGTGGGCCTGGTTGCTGGCGTTCGACGGGGTGCTGTTGTTCGATCCGCTG
GCCTGCCTGCGGCCCGGATTCTGGCTGTCGTTCGCCGCCGTCGCGATCCTGATGTTCACCTTTGGCGGCCGCCTGGGGCC
CTGGCGCTGGTGGCAGACCTGGACTCGCGCCCAATGGCTGGTTGCGCTCGGCCTGTGTCCGTTGCTGTTGATCCTGGGGC
TGCCGGTGAGCCTCAGCGGGCCGCTGGCGAACCTGCTGGCGGTGCCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTGTTGTTGCCGGTGCCGTTCGTGGGCGAGGGCCTGCTATGGATCGCTGGCGGGCTGCTCGACGTATGGTT
CAGGGGGCTGGCGTGGGTGGCCGGGCAACTGCCCGCCTGGACCCCGGCGGCGGTTCCGCCCTGGGCCTTGGGCATCGCCG
CCCTCGGTGCGTTTGTGCTGCTGTTGCCCAAGGGCGTGCCGCTGCGTCTTTTGGGTTGGCCAATGTTGAGCTTGATGGTC
TTTGCACCGCGGGAAAACCTGCCGCACGGGCAGGCCGAAATCTGGCAACTGGACGTGGGCCAGGGGCTGGCGGTGCTGGT
GCGTACCCATGGCCATGCCCTGCTTTATGACGCCGGGCCACGCTGGGGCGACGCCGATGCGGGCGAGCGTGTCGTGCTGC
CCACCTTGCGCAAGCTGGGGGTGCGCGAATTGGACCTGATGCTGCTCAGCCATGCCGATGCCGATCATGCCGGTGGTGCC
CTGGCGGTGCGCAACGGGCTGCCCACCCGGCAACTGATCAGCGGCGATCCCGACGCGCTGCCCGAGGCGTTGCACGCCGG
GCCTTGTGACAGTGGCCAGCGCTGGGAGTGGGACGGGGTCGGTTTCGCGCTGTGGCAATGGTCATCGGCCGAGGACAGCA
ACCAGAAGTCCTGCGTGTTGCGGGTGGAGGCGGGCGGCGAGCGCTTGCTGTTGACCGGCGACATCGACCGCCATGCCGAG
CGCGCCTTGCTCGATGGCCCCCTGGCGGTGCCGATCCACTGGCTGGCCGCCCCTCATCATGGCAGCCGCAGCTCATCGTC
GATGGCGCTGCTGGCACGTCTCAAGCCTCACTCGGTGCTGATTTCCCGCGGACAGGGCAATGCCTTCGGCCATCCACATC
CCCAGGTGATGGCCCGTTACCGCCGGGCGGGGATGACGATCTACGACAGTGCCGAACAGGGTGCCATTCGTCTGCAACTG
GGGGCCTTCGCACGGCCGCGTACCGAGGCCGGGCATCGCCGCTACTGGCGTGATCCACTGCCCGCCGGCCCCCCGGGCCG
ACATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.592

95.722

0.59

Multiple sequence alignment