Detailed information NTG0756505

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP74_RS17480
• Genome accession: NZ_CP124429
• Coordinates: 3561823..3562815 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0051
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3556823..3567815

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP74_RS17460 (QJP74_17460)	ygbM	3557461..3558237 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP74_RS17465 (QJP74_17465)	ygbN	3558326..3559690 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP74_RS17470 (QJP74_17470)	-	3559833..3560876 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP74_RS17475 (QJP74_17475)	-	3561101..3561652 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP74_RS17480 (QJP74_17480)	rpoS	3561823..3562815 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP74_RS17485 (QJP74_17485)	nlpD	3562878..3563972 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP74_RS17490 (QJP74_17490)	pcm	3564157..3564783 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP74_RS17495 (QJP74_17495)	surE	3564777..3565538 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP74_RS17500 (QJP74_17500)	truD	3565519..3566568 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP74_RS17505 (QJP74_17505)	ispF	3566565..3567044 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP74_RS17510 (QJP74_17510)	ispD	3567044..3567754 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=756505 QJP74_RS17480 WP_000081550.1 3561823..3562815(-) (rpoS) [Escherichia coli strain AVS0051]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=756505 QJP74_RS17480 WP_000081550.1 3561823..3562815(-) (rpoS) [Escherichia coli strain AVS0051]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715