Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | OCUAc18_RS15785 | Genome accession | NZ_AP024802 |
| Coordinates | 3263210..3263725 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477150.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain OCU Ac18 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3258210..3268725
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCUAc18_RS15765 (OCUAc18_30990) | - | 3258572..3260032 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| OCUAc18_RS15770 (OCUAc18_31000) | - | 3260309..3261514 (+) | 1206 | WP_032013965.1 | RtcB family protein | - |
| OCUAc18_RS15775 (OCUAc18_31010) | - | 3261533..3261676 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| OCUAc18_RS15780 (OCUAc18_31020) | omp38 | 3261801..3262829 (-) | 1029 | WP_000777889.1 | outer membrane protein Omp38 | - |
| OCUAc18_RS15785 (OCUAc18_31030) | fimT | 3263210..3263725 (+) | 516 | WP_000477150.1 | GspH/FimT family pseudopilin | Machinery gene |
| OCUAc18_RS15790 (OCUAc18_31040) | - | 3263834..3265009 (+) | 1176 | WP_000129973.1 | thiolase family protein | - |
| OCUAc18_RS15795 (OCUAc18_31050) | - | 3265136..3265576 (+) | 441 | Protein_3102 | VOC family protein | - |
| OCUAc18_RS15800 (OCUAc18_31060) | - | 3265622..3265975 (-) | 354 | WP_000457784.1 | SMR family transporter | - |
| OCUAc18_RS15805 (OCUAc18_31070) | - | 3266057..3266542 (-) | 486 | WP_000935245.1 | DUF934 domain-containing protein | - |
| OCUAc18_RS15810 (OCUAc18_31080) | - | 3266535..3268178 (-) | 1644 | WP_000281768.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19640.87 Da Isoelectric Point: 8.8196
>NTDB_id=75650 OCUAc18_RS15785 WP_000477150.1 3263210..3263725(+) (fimT) [Acinetobacter baumannii strain OCU Ac18]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQFKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQFKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=75650 OCUAc18_RS15785 WP_000477150.1 3263210..3263725(+) (fimT) [Acinetobacter baumannii strain OCU Ac18]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGTTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGTTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |