Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OM419_RS07280 Genome accession   NZ_CP110823
Coordinates   1571433..1572059 (+) Length   208 a.a.
NCBI ID   WP_008499926.1    Uniprot ID   A0AAX1WHW5
Organism   Enterobacter roggenkampii strain WS22-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566433..1577059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM419_RS07260 (OM419_07255) - 1566830..1568590 (-) 1761 WP_023327040.1 Lon protease family protein -
  OM419_RS07265 (OM419_07260) matP 1568777..1569229 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  OM419_RS07270 (OM419_07265) ompA 1569296..1570351 (-) 1056 WP_008499928.1 porin OmpA -
  OM419_RS07275 (OM419_07270) sulA 1570706..1571215 (-) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  OM419_RS07280 (OM419_07275) sxy/tfoX 1571433..1572059 (+) 627 WP_008499926.1 TfoX/Sxy family DNA transformation protein Regulator
  OM419_RS07285 (OM419_07280) yccS 1572016..1574178 (-) 2163 WP_023292863.1 YccS family putative transporter -
  OM419_RS07290 (OM419_07285) - 1574198..1574644 (-) 447 WP_008499924.1 YccF domain-containing protein -
  OM419_RS07295 (OM419_07290) helD 1574768..1576822 (+) 2055 WP_047071934.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23885.49 Da        Isoelectric Point: 9.6439

>NTDB_id=756473 OM419_RS07280 WP_008499926.1 1571433..1572059(+) (sxy/tfoX) [Enterobacter roggenkampii strain WS22-2]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=756473 OM419_RS07280 WP_008499926.1 1571433..1572059(+) (sxy/tfoX) [Enterobacter roggenkampii strain WS22-2]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCATTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGTTGGAAGGAGCTATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567