Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OPU65_RS18610 Genome accession   NZ_CP110812
Coordinates   3610161..3610445 (+) Length   94 a.a.
NCBI ID   WP_105979765.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3605161..3615445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS18575 (OPU65_18575) - 3605287..3606426 (+) 1140 WP_265625636.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  OPU65_RS18580 (OPU65_18580) - 3606448..3607101 (+) 654 WP_265625637.1 ABC transporter permease -
  OPU65_RS18585 (OPU65_18585) - 3607115..3608032 (+) 918 WP_409365378.1 osmoprotectant ABC transporter substrate-binding protein -
  OPU65_RS18590 (OPU65_18590) - 3608049..3608726 (+) 678 WP_265625638.1 ABC transporter permease -
  OPU65_RS18595 (OPU65_18595) - 3608775..3609173 (-) 399 WP_265625639.1 helix-turn-helix domain-containing protein -
  OPU65_RS18600 (OPU65_18600) - 3609345..3609746 (-) 402 WP_020452987.1 transcriptional regulator -
  OPU65_RS18605 (OPU65_18605) - 3609899..3610132 (+) 234 WP_164470226.1 helix-turn-helix transcriptional regulator -
  OPU65_RS18610 (OPU65_18610) abrB 3610161..3610445 (+) 285 WP_105979765.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OPU65_RS18615 (OPU65_18615) secG 3610615..3610845 (+) 231 WP_003185418.1 preprotein translocase subunit SecG -
  OPU65_RS18620 (OPU65_18620) - 3610986..3611732 (+) 747 WP_075751411.1 carboxylesterase -
  OPU65_RS18625 (OPU65_18625) rnr 3611746..3614049 (+) 2304 WP_265625640.1 ribonuclease R -
  OPU65_RS18630 (OPU65_18630) smpB 3614165..3614638 (+) 474 WP_009329604.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10471.35 Da        Isoelectric Point: 6.3182

>NTDB_id=756391 OPU65_RS18610 WP_105979765.1 3610161..3610445(+) (abrB) [Bacillus paralicheniformis strain CamBx3]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=756391 OPU65_RS18610 WP_105979765.1 3610161..3610445(+) (abrB) [Bacillus paralicheniformis strain CamBx3]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATTACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGGGGAGCGGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAGTTATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-85)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

96.809

0.543