Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OPU65_RS14735 Genome accession   NZ_CP110812
Coordinates   2823332..2824444 (-) Length   370 a.a.
NCBI ID   WP_003178089.1    Uniprot ID   A0A415J9T0
Organism   Bacillus paralicheniformis strain CamBx3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2818332..2829444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS14720 (OPU65_14720) gyrA 2818433..2820907 (-) 2475 WP_265625177.1 DNA gyrase subunit A -
  OPU65_RS14725 (OPU65_14725) gyrB 2821098..2823011 (-) 1914 WP_020449766.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OPU65_RS14730 (OPU65_14730) remB 2823072..2823314 (-) 243 WP_243941219.1 extracellular matrix regulator RemB -
  OPU65_RS14735 (OPU65_14735) recF 2823332..2824444 (-) 1113 WP_003178089.1 DNA replication/repair protein RecF Machinery gene
  OPU65_RS14740 (OPU65_14740) yaaA 2824461..2824676 (-) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  OPU65_RS14745 (OPU65_14745) dnaN 2824844..2825980 (-) 1137 WP_265625178.1 DNA polymerase III subunit beta -
  OPU65_RS14750 (OPU65_14750) dnaA 2826158..2827498 (-) 1341 WP_009330034.1 chromosomal replication initiator protein DnaA -
  OPU65_RS14755 (OPU65_14755) rpmH 2828137..2828271 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  OPU65_RS14760 (OPU65_14760) rnpA 2828356..2828715 (+) 360 WP_020453656.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=756378 OPU65_RS14735 WP_003178089.1 2823332..2824444(-) (recF) [Bacillus paralicheniformis strain CamBx3]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=756378 OPU65_RS14735 WP_003178089.1 2823332..2824444(-) (recF) [Bacillus paralicheniformis strain CamBx3]
TTGTATATCCAAAATCTAACATTGTCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCCAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTTAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAACCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTGACGGA
ATTCGCAGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGCTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGAACGACTGCATTGT
CACTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTTTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACTTTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886