Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OPU65_RS14485 Genome accession   NZ_CP110812
Coordinates   2777796..2778086 (+) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2772796..2783086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS14470 (OPU65_14470) - 2773006..2774202 (-) 1197 WP_165425809.1 G5 and 3D domain-containing protein -
  OPU65_RS14475 (OPU65_14475) - 2774447..2775214 (-) 768 WP_265625163.1 TatD family hydrolase -
  OPU65_RS14480 (OPU65_14480) metG 2775300..2777288 (-) 1989 WP_265625164.1 methionine--tRNA ligase -
  OPU65_RS14485 (OPU65_14485) abrB 2777796..2778086 (+) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OPU65_RS14490 (OPU65_14490) rsmI 2778136..2779011 (-) 876 WP_265627875.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  OPU65_RS14495 (OPU65_14495) - 2778986..2779279 (-) 294 WP_075752584.1 GIY-YIG nuclease family protein -
  OPU65_RS14500 (OPU65_14500) - 2779266..2780009 (-) 744 WP_243944460.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  OPU65_RS14505 (OPU65_14505) yabA 2780074..2780436 (-) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  OPU65_RS14510 (OPU65_14510) - 2780451..2781278 (-) 828 WP_003178162.1 stage 0 sporulation family protein -
  OPU65_RS14515 (OPU65_14515) holB 2781281..2782270 (-) 990 WP_152850009.1 DNA polymerase III subunit delta' -
  OPU65_RS14520 (OPU65_14520) - 2782282..2782722 (-) 441 WP_003178158.1 YaaR family protein -
  OPU65_RS14525 (OPU65_14525) - 2782734..2783063 (-) 330 WP_003178156.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=756376 OPU65_RS14485 WP_085959887.1 2777796..2778086(+) (abrB) [Bacillus paralicheniformis strain CamBx3]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=756376 OPU65_RS14485 WP_085959887.1 2777796..2778086(+) (abrB) [Bacillus paralicheniformis strain CamBx3]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938