Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OPU65_RS14150 Genome accession   NZ_CP110812
Coordinates   2715010..2716389 (-) Length   459 a.a.
NCBI ID   WP_152849931.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2710010..2721389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS14130 (OPU65_14130) ispF 2711529..2712005 (-) 477 WP_075752562.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OPU65_RS14135 (OPU65_14135) ispD 2711998..2712693 (-) 696 WP_265625140.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OPU65_RS14140 (OPU65_14140) - 2712710..2713798 (-) 1089 WP_265625141.1 PIN/TRAM domain-containing protein -
  OPU65_RS14145 (OPU65_14145) disA 2713930..2715006 (-) 1077 WP_020449840.1 DNA integrity scanning diadenylate cyclase DisA -
  OPU65_RS14150 (OPU65_14150) radA 2715010..2716389 (-) 1380 WP_152849931.1 DNA repair protein RadA Machinery gene
  OPU65_RS14155 (OPU65_14155) clpC 2716469..2718901 (-) 2433 WP_075752568.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  OPU65_RS14160 (OPU65_14160) - 2718898..2719989 (-) 1092 WP_023855926.1 protein arginine kinase -
  OPU65_RS14165 (OPU65_14165) - 2719989..2720543 (-) 555 WP_243944401.1 UvrB/UvrC motif-containing protein -
  OPU65_RS14170 (OPU65_14170) - 2720558..2721022 (-) 465 WP_075752574.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49847.34 Da        Isoelectric Point: 7.9972

>NTDB_id=756374 OPU65_RS14150 WP_152849931.1 2715010..2716389(-) (radA) [Bacillus paralicheniformis strain CamBx3]
MAKTKTKFICHSCGYESAKWMGKCPGCGTWNTMVEETIKKPAANRRTAFSHSVQTVQKPSPLTSIKTTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=756374 OPU65_RS14150 WP_152849931.1 2715010..2716389(-) (radA) [Bacillus paralicheniformis strain CamBx3]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGTTACGAATCCGCCAAGTGGATGGGGAAGTGCCCCGGATG
CGGCACATGGAATACCATGGTGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACGGTGCAAAAGCCTTCACCTCTCACTTCAATCAAAACAACAGAAGAGCCGCGAATTAAAACGAAACTGGGCGAATTC
AACCGCGTCTTGGGAAACGGTATCGTCAAAGGTTCACTCGTTTTAATCGGAGGCGATCCCGGCATCGGGAAATCAACCTT
GCTGCTTCAAGTATCTGCCCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGTGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGCATCAACAGTCCCACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAATCCGTCATTCGTGGTGGTTGATTCGATTCAAACCGTTTACCAAAGTGATATCACATCAGC
TCCGGGCAGCGTGTCACAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACAAAAGGGATTCCGATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTCCTTTACTTT
GAAGGCGAGCGGCATCATACATTTCGGATTTTAAGAGCCGTCAAAAACCGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTGACAGAAGTGCTGAATCCGTCGGAAATCTTTCTCGAAGAGCGCTCGGCGGGAGCAGCCG
GCTCGAGTGTCGTGGCTTCAATGGAAGGCACGAGGCCGGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCCACGAGTTTT
GGAAATCCGCGCAGGATGGCAACCGGAATTGATCATAACCGCGTCTCATTGCTGATGGCGGTTTTAGAAAAAAGGGTTGG
GCTGCTGCTGCAAAATCAAGACGCCTATTTAAAAGTCGCCGGCGGCGTCAAGCTGGACGAGCCGGCGATCGACCTCGCCG
TTGCGGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCATCCGACGGATTGTTTTATCGGAGAAGTCGGCTTGACA
GGGGAAGTCCGCAGAGTATCAAGGATAGAACAGAGGGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTGGAAGGATGGACAAAGCCGAAAGGAATTGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

90.83

99.782

0.906
  radA Streptococcus mitis NCTC 12261

62.031

98.693

0.612
  radA Streptococcus pneumoniae Rx1

62.031

98.693

0.612
  radA Streptococcus pneumoniae D39

62.031

98.693

0.612
  radA Streptococcus pneumoniae R6

62.031

98.693

0.612
  radA Streptococcus pneumoniae TIGR4

62.031

98.693

0.612
  radA Streptococcus mitis SK321

61.81

98.693

0.61