Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OPU65_RS12005 Genome accession   NZ_CP110812
Coordinates   2316072..2317025 (-) Length   317 a.a.
NCBI ID   WP_265624843.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2311072..2322025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS11985 (OPU65_11985) - 2311826..2313247 (+) 1422 WP_265624840.1 MDR family MFS transporter -
  OPU65_RS11990 (OPU65_11990) - 2313418..2314365 (-) 948 WP_265624841.1 siderophore ABC transporter substrate-binding protein -
  OPU65_RS11995 (OPU65_11995) - 2314380..2315138 (-) 759 WP_243943503.1 ABC transporter ATP-binding protein -
  OPU65_RS12000 (OPU65_12000) - 2315138..2316082 (-) 945 WP_265624842.1 iron chelate uptake ABC transporter family permease subunit -
  OPU65_RS12005 (OPU65_12005) ceuB 2316072..2317025 (-) 954 WP_265624843.1 ABC transporter permease Machinery gene
  OPU65_RS12010 (OPU65_12010) - 2317303..2318664 (+) 1362 WP_265624844.1 aspartate kinase -
  OPU65_RS12015 (OPU65_12015) - 2318800..2320518 (+) 1719 WP_265624845.1 methyl-accepting chemotaxis protein -
  OPU65_RS12020 (OPU65_12020) - 2320551..2321978 (-) 1428 WP_265624846.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35089.44 Da        Isoelectric Point: 10.1004

>NTDB_id=756369 OPU65_RS12005 WP_265624843.1 2316072..2317025(-) (ceuB) [Bacillus paralicheniformis strain CamBx3]
MKLRYLLLMLIILSFSSIFIGVKELSPLDLFRLNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFLAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=756369 OPU65_RS12005 WP_265624843.1 2316072..2317025(-) (ceuB) [Bacillus paralicheniformis strain CamBx3]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCGTTCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGACCTGTTCCGCTTGAACGAGGACGAAATCCAAACGCTTTACATAAGCAGAATCCCGCGCTTGATCAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATCTGCGGGCTGATCATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCGACGACAGCT
GGAACGATGGATTGGGCGAGGCTCGGCGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTAAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGCTTTTTGTTCGTCAAAATTTTGGATAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTTGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCTACTTTCCTGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTTGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCTATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGACTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGCACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCACAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCAGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.899

99.685

0.517