Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   OPU65_RS08310 Genome accession   NZ_CP110812
Coordinates   1601690..1602268 (-) Length   192 a.a.
NCBI ID   WP_026579946.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1596690..1607268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS08285 (OPU65_08285) - 1597396..1597875 (-) 480 WP_409365397.1 DUF2690 domain-containing protein -
  OPU65_RS08290 (OPU65_08290) - 1598062..1599837 (+) 1776 WP_265627417.1 S8 family peptidase -
  OPU65_RS08295 (OPU65_08295) lepB 1599981..1600499 (-) 519 WP_128822839.1 signal peptidase I -
  OPU65_RS08300 (OPU65_08300) - 1600512..1601123 (-) 612 WP_043927307.1 TVP38/TMEM64 family protein -
  OPU65_RS08305 (OPU65_08305) - 1601331..1601696 (+) 366 WP_265627420.1 hypothetical protein -
  OPU65_RS08310 (OPU65_08310) comK 1601690..1602268 (-) 579 WP_026579946.1 competence protein ComK Regulator
  OPU65_RS08315 (OPU65_08315) - 1602541..1602774 (+) 234 WP_020450828.1 IDEAL domain-containing protein -
  OPU65_RS08320 (OPU65_08320) - 1602843..1603700 (-) 858 WP_145653624.1 SDR family oxidoreductase -
  OPU65_RS08325 (OPU65_08325) - 1603821..1605371 (+) 1551 WP_265627423.1 FAD-dependent oxidoreductase -
  OPU65_RS23225 - 1605592..1605963 (+) 372 Protein_1663 protoglobin family protein -
  OPU65_RS23230 - 1605973..1606770 (+) 798 WP_409365410.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22420.64 Da        Isoelectric Point: 8.6274

>NTDB_id=756362 OPU65_RS08310 WP_026579946.1 1601690..1602268(-) (comK) [Bacillus paralicheniformis strain CamBx3]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=756362 OPU65_RS08310 WP_026579946.1 1601690..1602268(-) (comK) [Bacillus paralicheniformis strain CamBx3]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGGAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACAGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672