Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   OPU65_RS08180 Genome accession   NZ_CP110812
Coordinates   1573771..1577271 (-) Length   1166 a.a.
NCBI ID   WP_265627396.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568771..1582271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS08170 (OPU65_08170) sbcD 1568846..1570027 (-) 1182 WP_265627394.1 exonuclease subunit SbcD -
  OPU65_RS08175 (OPU65_08175) addA 1570092..1573784 (-) 3693 WP_265627395.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  OPU65_RS08180 (OPU65_08180) addB 1573771..1577271 (-) 3501 WP_265627396.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  OPU65_RS08185 (OPU65_08185) modB 1577381..1578037 (-) 657 WP_243939524.1 molybdate ABC transporter permease subunit -
  OPU65_RS08190 (OPU65_08190) modA 1578046..1578804 (-) 759 WP_265627836.1 molybdate ABC transporter substrate-binding protein -
  OPU65_RS08195 (OPU65_08195) - 1579045..1579485 (+) 441 WP_243939521.1 ferritin-like domain-containing protein -
  OPU65_RS08200 (OPU65_08200) - 1579609..1580250 (+) 642 WP_265627837.1 response regulator transcription factor -
  OPU65_RS08205 (OPU65_08205) - 1580247..1581614 (+) 1368 WP_265627398.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 1166 a.a.        Molecular weight: 134427.54 Da        Isoelectric Point: 5.6296

>NTDB_id=756361 OPU65_RS08180 WP_265627396.1 1573771..1577271(-) (addB) [Bacillus paralicheniformis strain CamBx3]
MGAVFLSGRSGSGKTTFILNEIREKLRDEPLGKPIIFLVPDQMTFLMEYELSKTPDLGGTIRAQVYSFSRLAWRVLQHTG
GMNRPFLTGTGIQMLLRRLIEEHKGEFKVYQNASDKSGFTEQVERMLTEFKRHCLPPESIRDMIEGTGKSEYEDERILSD
KLHDLYILYSKLEENLENQYVQSEDYLTLLAEQIPYADEIRNAAVYVDGFHQFTPQEMNVLEQLMVHAEEITFSLTADKP
FTANSPNELHLFRMTGKAYYDLYQKAKELGLDPSEVRLEETKRHQQHPELRHLERYFDERPAKPYRGRTESLRIMQASNR
RTEIEGIAREIHSLIRQGRFRLRDIAVIARNVQDYKDTIKEVFKDCELPFFIDGKESMQNHPLVELIRSTLDIIKGNWRY
EAVFRCVKTELLFPEGQPKERLREQIDQLENYCIAYGIKGDRWTSKDPFVYRRYASLDEDFAKTDKEIETENMLNELKGW
IVPPVHRLQKRLKKADTVREMAEAVYLYLEEVDVPMKLEQERRLAEESGMIAESRQHEQVWDAVIQLLDEFVEMMGTERI
SFALFQQMIETGLESLKFALIPPALDQVFIGNMDLSRMYGTKCTFLIGVNDGILPARPADDGVLSDDDREWLKRNGAQLA
ATGREQLLDENFLIYMSLSSPSEKLYVSYPIADSEGKTLLPSTVVKRLNELFPDGEEKMLIHEPEQLNDDAQLEFLVNKG
AALSHLAGQLGIWTRQYAISDVWWSTYNFLMNEPDRIFSQNILSSLFFRNKVENLNRHVSRDLYGEHIQGSVSRMETFKA
CPFSHFASHGLKLKERQFFKLEAPDIGQLFHSALKLISDRLHELKLDWRDLTKAQCETLSGDAVERLAPKLQKEILLSSN
RHHYVKQKLQKIIARVSGILSEHAKASGFAPVGIELGFGGKGPLPPMRFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV
DYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSTDWLGIKASPAGVLYFHVHDPMIQASVPLGLDEIEKEIFKKFKMKGL
LLGDQEAIKLMDTTLEQGRSDMISAGLKKDGSLRSDSDVIAEEDFHVLRRHIRRTFQKAGEEITDGKVSIEPYKLKDRTP
CTYCSYRSFCQFDESLEENEYRILKPEKDNVILERLKKEDETDGDF

Nucleotide


Download         Length: 3501 bp        

>NTDB_id=756361 OPU65_RS08180 WP_265627396.1 1573771..1577271(-) (addB) [Bacillus paralicheniformis strain CamBx3]
GTGGGAGCAGTATTTTTATCAGGCAGATCCGGGAGTGGGAAAACGACCTTTATCCTGAATGAAATCAGAGAAAAACTTCG
CGATGAACCGCTCGGAAAACCGATCATTTTTCTAGTCCCGGATCAAATGACGTTTTTAATGGAATACGAGCTTAGCAAAA
CACCCGATTTGGGCGGCACCATCCGCGCCCAAGTGTACAGTTTTTCAAGGCTTGCCTGGCGAGTGCTCCAGCACACAGGA
GGCATGAACCGGCCGTTTTTGACGGGGACGGGCATTCAGATGCTGCTTCGGAGACTGATTGAAGAGCATAAGGGCGAGTT
TAAAGTCTATCAAAACGCAAGCGATAAAAGCGGATTTACGGAGCAGGTGGAACGGATGCTGACCGAATTTAAACGGCATT
GTCTGCCGCCTGAAAGCATCCGGGACATGATAGAGGGGACGGGCAAATCGGAATACGAAGATGAACGGATCCTTTCCGAT
AAATTGCACGACTTATATATTTTGTACAGCAAGCTTGAGGAAAATCTGGAGAATCAATATGTTCAATCTGAGGATTATTT
GACACTTTTGGCCGAGCAGATTCCGTATGCGGATGAGATTAGAAACGCTGCCGTTTACGTGGACGGATTTCACCAATTTA
CGCCACAGGAGATGAACGTGCTGGAACAGCTGATGGTCCATGCGGAGGAGATCACTTTTTCGCTGACGGCGGATAAGCCG
TTTACGGCCAACAGCCCGAATGAGCTCCATCTGTTCAGAATGACCGGGAAAGCGTACTATGACCTTTACCAGAAGGCGAA
GGAACTCGGCCTTGATCCGTCAGAAGTGCGGCTGGAAGAAACGAAACGGCACCAGCAACATCCGGAGCTCCGGCACCTTG
AACGCTATTTTGACGAGCGTCCTGCGAAACCGTATCGCGGACGGACGGAATCGCTCCGCATCATGCAGGCGTCGAACAGA
AGAACCGAGATTGAAGGAATTGCGCGCGAGATTCATTCTTTAATCCGCCAGGGCCGCTTCCGGCTTAGGGATATCGCCGT
CATCGCCCGCAATGTCCAAGATTATAAAGATACGATAAAAGAAGTTTTTAAAGACTGCGAACTTCCTTTTTTCATAGACG
GCAAAGAATCGATGCAAAATCATCCGCTTGTTGAGCTGATCCGTTCGACGCTTGATATCATTAAAGGAAACTGGCGGTAT
GAAGCGGTGTTCCGCTGTGTTAAAACGGAGCTTTTATTCCCGGAGGGACAGCCGAAGGAAAGGCTGCGCGAACAGATTGA
CCAGCTTGAAAACTACTGTATTGCGTATGGGATTAAAGGAGACAGATGGACAAGCAAAGATCCGTTTGTTTACAGAAGAT
ACGCTTCACTTGATGAGGATTTCGCCAAGACAGATAAAGAGATTGAAACGGAAAATATGCTCAACGAATTAAAGGGCTGG
ATCGTTCCGCCGGTCCACAGGCTGCAGAAGCGCTTGAAAAAAGCTGACACAGTCAGGGAAATGGCCGAAGCCGTCTACCT
TTATCTTGAAGAAGTCGATGTTCCGATGAAGCTTGAACAGGAAAGGCGGCTGGCCGAAGAAAGCGGTATGATTGCCGAGT
CGCGCCAGCATGAGCAAGTATGGGATGCCGTTATTCAACTGTTGGACGAGTTTGTTGAAATGATGGGCACAGAGCGGATA
TCGTTTGCTTTATTTCAGCAAATGATTGAAACCGGCTTGGAGTCTTTGAAATTCGCGCTGATTCCGCCCGCTCTTGATCA
AGTGTTTATCGGCAATATGGACCTTTCAAGGATGTACGGCACGAAATGCACATTTCTCATCGGTGTAAACGACGGCATAC
TTCCGGCGAGGCCTGCGGATGACGGCGTGCTTTCAGACGATGACAGAGAGTGGCTGAAACGAAACGGCGCACAGCTTGCG
GCAACAGGGCGAGAGCAGCTTTTGGACGAGAATTTTCTGATCTATATGTCGCTTTCAAGCCCGTCTGAAAAGCTCTATGT
CTCCTATCCGATCGCGGATTCGGAAGGGAAGACGCTGCTTCCTTCAACAGTGGTGAAACGTCTGAATGAACTGTTCCCGG
ATGGCGAAGAGAAGATGCTGATTCATGAACCCGAGCAGCTGAACGATGATGCCCAGCTTGAATTTCTCGTGAATAAAGGC
GCCGCCTTGAGCCATCTGGCAGGACAGCTCGGCATCTGGACGAGGCAGTATGCGATCAGCGATGTATGGTGGAGTACATA
CAACTTTTTAATGAATGAGCCTGACCGCATTTTTTCTCAAAATATCCTGTCCAGCCTGTTTTTCAGAAACAAGGTCGAAA
ACTTGAACCGGCATGTGAGCCGCGATTTATATGGGGAGCACATTCAGGGAAGCGTGTCGCGGATGGAGACGTTCAAAGCC
TGTCCGTTTTCCCATTTTGCTTCGCACGGTTTAAAGCTGAAAGAACGCCAATTTTTCAAGCTTGAAGCTCCGGATATCGG
CCAGCTGTTTCACTCGGCGCTGAAGCTGATTTCAGACCGGCTTCACGAGCTTAAACTGGATTGGCGCGACTTAACGAAAG
CCCAATGCGAGACTTTGTCAGGTGATGCAGTTGAACGGCTCGCGCCAAAGCTGCAAAAAGAGATTTTGCTCAGTTCGAAC
CGTCATCATTACGTGAAGCAGAAGCTGCAAAAAATCATTGCCAGGGTATCGGGCATTTTAAGTGAGCATGCAAAAGCAAG
CGGGTTTGCCCCCGTCGGTATAGAGCTCGGATTCGGGGGGAAAGGCCCGCTTCCTCCAATGCGTTTTACCTTGAAGAACG
GCTGCACGATGGAGCTTGTCGGCCGGATCGACAGAGTGGATAAAGCGGAGAGCTCAAAAGGGCTGCTGCTTAGGATTGTC
GACTATAAATCAAGCGATAAAGGCCTCGATTTGGCCGAGGTGTATTACGGCCTCGCTCTGCAAATGCTGACATATCTCGA
TTTGTCGATCACACATTCAACCGATTGGCTCGGCATAAAGGCATCCCCGGCAGGCGTGCTTTATTTTCATGTGCACGATC
CGATGATCCAGGCTTCGGTGCCGCTCGGCCTTGATGAAATAGAAAAAGAGATTTTCAAAAAGTTCAAGATGAAAGGGCTG
CTCTTGGGAGACCAGGAAGCGATCAAGCTGATGGACACCACACTGGAACAAGGCAGGTCGGACATGATTAGCGCCGGTTT
GAAAAAAGACGGTTCGCTCCGTTCGGATTCTGACGTTATTGCAGAAGAGGATTTTCATGTGTTGAGGCGCCATATCCGCC
GGACATTTCAGAAGGCCGGCGAGGAGATCACAGACGGCAAAGTGTCGATCGAGCCTTACAAGCTAAAAGACCGGACACCG
TGCACATATTGTTCATACCGGTCATTCTGCCAGTTTGACGAATCGCTTGAGGAAAACGAATACCGGATATTAAAACCGGA
AAAAGACAACGTGATTTTGGAGCGGCTGAAAAAGGAGGATGAGACAGATGGAGATTTCTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(790-1131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

73.391

99.914

0.733