Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OPU65_RS07690 Genome accession   NZ_CP110812
Coordinates   1471265..1473094 (-) Length   609 a.a.
NCBI ID   WP_301441320.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1466265..1478094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS07655 (OPU65_07655) - 1466647..1467282 (-) 636 WP_265627328.1 GTP pyrophosphokinase family protein -
  OPU65_RS07660 (OPU65_07660) - 1467314..1467679 (-) 366 WP_003180659.1 hypothetical protein -
  OPU65_RS07665 (OPU65_07665) - 1467810..1468382 (+) 573 WP_265627329.1 CYTH domain-containing protein -
  OPU65_RS07670 (OPU65_07670) - 1468395..1469048 (+) 654 WP_265627330.1 lytic transglycosylase domain-containing protein -
  OPU65_RS07675 (OPU65_07675) - 1469332..1469730 (+) 399 WP_003180652.1 thiol management oxidoreductase -
  OPU65_RS07680 (OPU65_07680) spxH 1469727..1470629 (+) 903 WP_265627331.1 protease adaptor protein SpxH -
  OPU65_RS07685 (OPU65_07685) - 1471040..1471207 (+) 168 WP_023856663.1 hypothetical protein -
  OPU65_RS07690 (OPU65_07690) pepF 1471265..1473094 (-) 1830 WP_301441320.1 oligoendopeptidase F Regulator
  OPU65_RS07695 (OPU65_07695) - 1473307..1474455 (-) 1149 WP_265627333.1 competence protein CoiA family protein -
  OPU65_RS07700 (OPU65_07700) - 1474626..1476170 (+) 1545 WP_265627334.1 sensor histidine kinase -
  OPU65_RS07705 (OPU65_07705) - 1476193..1476912 (+) 720 WP_265627335.1 response regulator -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70400.96 Da        Isoelectric Point: 4.8544

>NTDB_id=756353 OPU65_RS07690 WP_301441320.1 1471265..1473094(-) (pepF) [Bacillus paralicheniformis strain CamBx3]
MAEEKKSKKLPSREEVKQEDTWRLEDIFPSDDAWNEEFQAVKELLPKLSEFKGRLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKAANLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGILAEASDVLSSSSNTFGMLNNADMEFPEITDENGEKVQLTHGNYVTFLESENRDVRRAAFKAVYETYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYEQAKDYMLKGLTPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYLLNTIDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHVKAQ
EGEPLTPELLTSIYYDLNKKYFGDNIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKSAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLQKVNHS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=756353 OPU65_RS07690 WP_301441320.1 1471265..1473094(-) (pepF) [Bacillus paralicheniformis strain CamBx3]
GTGGCTGAAGAAAAAAAATCGAAGAAACTGCCTTCAAGAGAAGAGGTGAAGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTCCCGTCAGATGACGCTTGGAACGAGGAATTTCAAGCCGTTAAAGAACTGCTGCCCAAGCTTTCCGAATTCAAGGGCA
GGCTCGGCCATTCCGCCGATGATTTATATGAAGCGCTGACTTATCAGGATAAGGTGATGGAGCGTCTCGGGAAGCTGTAT
ACGTACGCTCACATGCGCTATGATCAGGATACTGGAAATTCTTTTTACCAAGGCCTCAATGATAAAGCGGCCAACCTCTA
TACCCAGGCTGCGAGCGCGACGGCCTACATGGTGCCGGAAATACTATCGATTCAGGAAGAAAAGCTTCAGCAGTTCCTGT
TGGAAAAAGAGGAGTTAAAGCTTTACTCACATGCTCTCGAAGAAATCAATAAAGAGCGTCCTCACGTGCTGAGCGAGGAG
GAGGAAGGGATTTTGGCCGAAGCGTCTGATGTTCTTTCATCTTCTTCCAATACGTTCGGCATGCTGAATAACGCCGATAT
GGAATTTCCGGAGATCACCGATGAAAATGGAGAAAAGGTGCAGCTCACACACGGCAATTATGTCACCTTTTTGGAAAGCG
AGAATCGTGATGTCCGCCGCGCGGCATTCAAGGCGGTTTACGAAACATACGGCCGCTTTAAAAACACGCTCGCTTCCACG
CTCAGCGGAGCTGTGAAAAAAGACAACTTTTATGCGAAGGTTAAACATTATAAATCGGCGCGGGAAGCTGCTTTGTCGCG
CAACAGCATTCCTGAAGAAGTCTACGACAATCTTGTCAGCACGATCAACAAGCATCTCCCGCTTCTTCACCGCTATGTTG
AGCTTAGAAAAAAAGTGCTTGAGCTTGATGAGGTGCACATGTATGACCTGTATACTCCGCTTGTAAAGGACTCTGGAATG
AAAGTTACCTACGAGCAGGCAAAGGACTATATGCTGAAAGGTTTGACGCCTTTAGGGGAAGAATATTCATCCATCCTGAA
AGAAGGATTGAACAACCGCTGGGTCGATGTGTATGAAAACAAAGGAAAACGAAGCGGCGCTTATTCCTCAGGAACTTACG
GAACAAATCCGTATATTTTGATGAACTGGCAGGACAACGTCAATAATTTGTTTACGCTCGTCCATGAATTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCTTACCCGTACGGAAACTACAGCATTTTCGTAGCCGAGGTAGCTTCTAC
GACGAATGAAGCGCTTTTGGGAGAATACTTGCTGAATACAATCGACGATGAAAAACAGCGGCTCTATATTTTGAATCATA
TGCTTGAAGGCTTCAAGGGAACGGTTTTCAGACAGACGATGTTTGCCGAATTTGAACATGAGATCCATGTCAAAGCCCAG
GAAGGTGAACCGCTGACACCTGAGCTGTTAACGAGCATCTACTATGATTTGAATAAAAAATATTTCGGTGACAATATTGA
GATTGATAAGGAAATCGGTCTTGAGTGGTCAAGAATACCGCATTTCTACTACAATTATTATGTGTATCAGTACGCCACAG
GCTTCAGTGCAGCTCAGGCGCTCAGTCAGCAGATTTTAAAAGAAGGCAAATCGGCTGTTGACCGCTATATTGAGTTCTTG
AAAGCGGGAAGCTCGGATTATCCGATTGAAGTGCTGAAAAAAGCCGGTGTCGATATGACATCTTCAGAGCCGATCGAAGC
TGCGTGCAAAAAGTTTGAAGAGCAGCTGAACGAAATGGAAGAACTTTTGCAAAAAGTCAATCATTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.419

98.03

0.494