Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OPU65_RS06120 Genome accession   NZ_CP110812
Coordinates   1185204..1185491 (-) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180204..1190491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS06105 (OPU65_06105) ade 1181125..1182846 (-) 1722 WP_265627822.1 adenine deaminase -
  OPU65_RS06110 (OPU65_06110) - 1182973..1183635 (-) 663 Protein_1219 potassium channel family protein -
  OPU65_RS06115 (OPU65_06115) - 1183699..1185036 (-) 1338 WP_243940102.1 ATP-binding protein -
  OPU65_RS06120 (OPU65_06120) abrB 1185204..1185491 (-) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OPU65_RS06125 (OPU65_06125) mreBH 1185797..1186804 (+) 1008 WP_003181381.1 rod-share determining protein MreBH -
  OPU65_RS06130 (OPU65_06130) - 1186878..1187009 (+) 132 WP_003181378.1 protein YkpC -
  OPU65_RS06135 (OPU65_06135) - 1187100..1188332 (+) 1233 WP_265627144.1 aminopeptidase -
  OPU65_RS06140 (OPU65_06140) - 1188448..1188822 (-) 375 WP_265627145.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=756348 OPU65_RS06120 WP_020451235.1 1185204..1185491(-) (abrB) [Bacillus paralicheniformis strain CamBx3]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=756348 OPU65_RS06120 WP_020451235.1 1185204..1185491(-) (abrB) [Bacillus paralicheniformis strain CamBx3]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGATAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCTGAA
TTGCTTTTGGAAGAAATTAAAGCCGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537