Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OPU65_RS05285 Genome accession   NZ_CP110812
Coordinates   1018892..1019794 (-) Length   300 a.a.
NCBI ID   WP_265627074.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1013892..1024794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS05270 (OPU65_05270) xerC 1014252..1015166 (-) 915 WP_265627071.1 tyrosine recombinase XerC -
  OPU65_RS05275 (OPU65_05275) trmFO 1015233..1016537 (-) 1305 WP_265627072.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OPU65_RS05280 (OPU65_05280) topA 1016613..1018688 (-) 2076 WP_265627073.1 type I DNA topoisomerase -
  OPU65_RS05285 (OPU65_05285) dprA 1018892..1019794 (-) 903 WP_265627074.1 DNA-processing protein DprA Machinery gene
  OPU65_RS05290 (OPU65_05290) sucD 1019907..1020809 (-) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  OPU65_RS05295 (OPU65_05295) sucC 1020828..1021988 (-) 1161 WP_020451378.1 ADP-forming succinate--CoA ligase subunit beta -
  OPU65_RS05300 (OPU65_05300) - 1022164..1022448 (-) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  OPU65_RS05305 (OPU65_05305) - 1022445..1024142 (-) 1698 WP_322784726.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33232.61 Da        Isoelectric Point: 10.0703

>NTDB_id=756347 OPU65_RS05285 WP_265627074.1 1018892..1019794(-) (dprA) [Bacillus paralicheniformis strain CamBx3]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAICSPDYPASLKTIHDPPPVLFLKGNVKFLHEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPDVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLNIEDILSELPPSRTQYIEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=756347 OPU65_RS05285 WP_265627074.1 1018892..1019794(-) (dprA) [Bacillus paralicheniformis strain CamBx3]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGTGTCCGCATG
ACCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CGTTAAATTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCTGTTCAAAAGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCGACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACCGCATATCAAGCCCTAGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGCCCGATCTTTGACGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATATAGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

56.856

99.667

0.567
  dprA Haemophilus influenzae Rd KW20

45.763

78.667

0.36