Detailed information
Bioinformatically predicted
Overview
| Name | rok | Type | Regulator |
| Locus tag | OPU65_RS04080 | Genome accession | NZ_CP110812 |
| Coordinates | 802653..803129 (-) | Length | 158 a.a. |
| NCBI ID | WP_059231482.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain CamBx3 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 800374..851723 | 802653..803129 | within | 0 |
Gene organization within MGE regions
Location: 800374..851723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OPU65_RS04070 (OPU65_04070) | - | 800374..800958 (-) | 585 | WP_243940516.1 | TetR family transcriptional regulator | - |
| OPU65_RS04075 (OPU65_04075) | - | 801396..802016 (+) | 621 | WP_265626942.1 | hypothetical protein | - |
| OPU65_RS04080 (OPU65_04080) | rok | 802653..803129 (-) | 477 | WP_059231482.1 | hypothetical protein | Regulator |
| OPU65_RS04085 (OPU65_04085) | - | 803266..803865 (-) | 600 | WP_265626943.1 | GNAT family N-acetyltransferase | - |
| OPU65_RS04090 (OPU65_04090) | - | 803898..804370 (-) | 473 | Protein_815 | DUF4944 domain-containing protein | - |
| OPU65_RS04095 (OPU65_04095) | - | 804476..805075 (-) | 600 | WP_265626944.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| OPU65_RS04100 (OPU65_04100) | - | 805251..805730 (-) | 480 | WP_265626945.1 | hypothetical protein | - |
| OPU65_RS04105 (OPU65_04105) | - | 805782..806024 (-) | 243 | WP_265626946.1 | hypothetical protein | - |
| OPU65_RS04110 (OPU65_04110) | - | 806084..807064 (-) | 981 | WP_265626947.1 | S9 family peptidase | - |
| OPU65_RS04115 (OPU65_04115) | - | 807243..807536 (-) | 294 | WP_243940506.1 | hypothetical protein | - |
| OPU65_RS04120 (OPU65_04120) | - | 808174..808602 (-) | 429 | WP_265626948.1 | HIT family protein | - |
| OPU65_RS04125 (OPU65_04125) | - | 809634..809837 (-) | 204 | WP_243940500.1 | hypothetical protein | - |
| OPU65_RS04130 (OPU65_04130) | - | 810441..811169 (-) | 729 | WP_265626949.1 | UPF0489 family protein | - |
| OPU65_RS04135 (OPU65_04135) | - | 811402..813123 (+) | 1722 | WP_265626950.1 | T7SS effector LXG polymorphic toxin | - |
| OPU65_RS04140 (OPU65_04140) | - | 813142..813486 (+) | 345 | WP_265626951.1 | hypothetical protein | - |
| OPU65_RS23185 | - | 813562..813855 (-) | 294 | Protein_826 | peptidoglycan-binding domain-containing protein | - |
| OPU65_RS23190 | - | 813928..814641 (-) | 714 | Protein_827 | N-acetylmuramoyl-L-alanine amidase | - |
| OPU65_RS04155 (OPU65_04155) | - | 814693..814956 (-) | 264 | WP_265626952.1 | phage holin | - |
| OPU65_RS04160 (OPU65_04160) | - | 814972..815241 (-) | 270 | WP_265626953.1 | hemolysin XhlA family protein | - |
| OPU65_RS04165 (OPU65_04165) | - | 815304..815480 (-) | 177 | WP_006637259.1 | XkdX family protein | - |
| OPU65_RS04170 (OPU65_04170) | - | 815477..816664 (-) | 1188 | WP_265626954.1 | phage baseplate upper protein | - |
| OPU65_RS04175 (OPU65_04175) | - | 816678..819323 (-) | 2646 | WP_265626955.1 | peptidase G2 autoproteolytic cleavage domain-containing protein | - |
| OPU65_RS04180 (OPU65_04180) | - | 819359..821068 (-) | 1710 | WP_265626956.1 | phage tail protein | - |
| OPU65_RS04185 (OPU65_04185) | - | 821081..821917 (-) | 837 | WP_265626957.1 | phage tail family protein | - |
| OPU65_RS04190 (OPU65_04190) | - | 821917..825810 (-) | 3894 | WP_265626958.1 | phage tail tape measure protein | - |
| OPU65_RS04195 (OPU65_04195) | - | 825823..826005 (-) | 183 | WP_265627930.1 | hypothetical protein | - |
| OPU65_RS04200 (OPU65_04200) | gpG | 826008..826346 (-) | 339 | WP_265626959.1 | phage tail assembly chaperone G | - |
| OPU65_RS04205 (OPU65_04205) | - | 826406..827014 (-) | 609 | WP_265626960.1 | major tail protein | - |
| OPU65_RS04210 (OPU65_04210) | - | 827014..827394 (-) | 381 | WP_265626961.1 | hypothetical protein | - |
| OPU65_RS04215 (OPU65_04215) | - | 827391..827774 (-) | 384 | WP_265626962.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| OPU65_RS04220 (OPU65_04220) | - | 827767..828141 (-) | 375 | WP_265626963.1 | phage head closure protein | - |
| OPU65_RS04225 (OPU65_04225) | - | 828071..828421 (-) | 351 | WP_265626964.1 | head-tail connector protein | - |
| OPU65_RS04230 (OPU65_04230) | - | 828437..828886 (-) | 450 | Protein_843 | collagen-like protein | - |
| OPU65_RS04235 (OPU65_04235) | - | 828908..830188 (-) | 1281 | WP_265626965.1 | phage major capsid protein | - |
| OPU65_RS04240 (OPU65_04240) | - | 830225..830917 (-) | 693 | WP_265626966.1 | head maturation protease, ClpP-related | - |
| OPU65_RS04245 (OPU65_04245) | - | 830901..832031 (-) | 1131 | WP_265626967.1 | phage portal protein | - |
| OPU65_RS04250 (OPU65_04250) | - | 832212..832406 (-) | 195 | WP_409365388.1 | DUF1056 family protein | - |
| OPU65_RS04255 (OPU65_04255) | - | 832416..834122 (-) | 1707 | WP_265626968.1 | terminase large subunit | - |
| OPU65_RS04260 (OPU65_04260) | - | 834119..834634 (-) | 516 | WP_265626969.1 | phage terminase small subunit P27 family | - |
| OPU65_RS04265 (OPU65_04265) | - | 834843..835178 (-) | 336 | WP_265626970.1 | transglycosylase | - |
| OPU65_RS04270 (OPU65_04270) | - | 835138..835512 (-) | 375 | WP_265626971.1 | HNH endonuclease signature motif containing protein | - |
| OPU65_RS04275 (OPU65_04275) | - | 835714..836373 (-) | 660 | WP_217620796.1 | hypothetical protein | - |
| OPU65_RS04280 (OPU65_04280) | - | 836395..837342 (-) | 948 | WP_217620797.1 | hypothetical protein | - |
| OPU65_RS04285 (OPU65_04285) | - | 837629..837886 (-) | 258 | WP_217620798.1 | hypothetical protein | - |
| OPU65_RS04290 (OPU65_04290) | - | 838299..838679 (-) | 381 | WP_145685266.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| OPU65_RS04295 (OPU65_04295) | - | 838792..839157 (-) | 366 | WP_186440857.1 | YopX family protein | - |
| OPU65_RS04300 (OPU65_04300) | - | 839172..839687 (-) | 516 | WP_265626972.1 | putative metallopeptidase | - |
| OPU65_RS04305 (OPU65_04305) | - | 839690..839860 (-) | 171 | WP_003185375.1 | Fur-regulated basic protein FbpA | - |
| OPU65_RS04310 (OPU65_04310) | - | 839857..840396 (-) | 540 | WP_061578362.1 | ERCC4 domain-containing protein | - |
| OPU65_RS04315 (OPU65_04315) | - | 840393..840830 (-) | 438 | WP_265626973.1 | hypothetical protein | - |
| OPU65_RS04320 (OPU65_04320) | - | 840808..841179 (-) | 372 | WP_265626974.1 | hypothetical protein | - |
| OPU65_RS04325 (OPU65_04325) | - | 841401..843833 (-) | 2433 | WP_265626975.1 | phage/plasmid primase, P4 family | - |
| OPU65_RS04330 (OPU65_04330) | - | 843894..844334 (-) | 441 | WP_265626976.1 | DUF669 domain-containing protein | - |
| OPU65_RS04335 (OPU65_04335) | - | 844334..845266 (-) | 933 | WP_265626977.1 | AAA family ATPase | - |
| OPU65_RS04340 (OPU65_04340) | - | 845270..845830 (-) | 561 | WP_265626978.1 | host-nuclease inhibitor Gam family protein | - |
| OPU65_RS04345 (OPU65_04345) | - | 846027..846293 (-) | 267 | WP_077736770.1 | YqaH family protein | - |
| OPU65_RS04350 (OPU65_04350) | - | 846290..846853 (-) | 564 | WP_265626979.1 | hypothetical protein | - |
| OPU65_RS04355 (OPU65_04355) | - | 846906..847178 (+) | 273 | WP_265626980.1 | hypothetical protein | - |
| OPU65_RS04360 (OPU65_04360) | - | 847165..847329 (-) | 165 | WP_017474700.1 | hypothetical protein | - |
| OPU65_RS04365 (OPU65_04365) | - | 847481..847792 (-) | 312 | WP_265626981.1 | DNA-binding protein | - |
| OPU65_RS04370 (OPU65_04370) | - | 847807..848571 (-) | 765 | WP_265626982.1 | Rha family transcriptional regulator | - |
| OPU65_RS04375 (OPU65_04375) | - | 848686..848904 (-) | 219 | WP_048355960.1 | helix-turn-helix transcriptional regulator | - |
| OPU65_RS04380 (OPU65_04380) | - | 849034..849426 (+) | 393 | WP_265626983.1 | helix-turn-helix domain-containing protein | - |
| OPU65_RS04385 (OPU65_04385) | - | 849407..850531 (+) | 1125 | WP_265626984.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OPU65_RS04390 (OPU65_04390) | - | 850572..851723 (+) | 1152 | WP_265626985.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 18276.16 Da Isoelectric Point: 10.3521
>NTDB_id=756343 OPU65_RS04080 WP_059231482.1 802653..803129(-) (rok) [Bacillus paralicheniformis strain CamBx3]
MFNEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDRESDPAINKKSSLIDLASAAAEELKQSQHAADKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILQKPKSL
MFNEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDRESDPAINKKSSLIDLASAAAEELKQSQHAADKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILQKPKSL
Nucleotide
Download Length: 477 bp
>NTDB_id=756343 OPU65_RS04080 WP_059231482.1 802653..803129(-) (rok) [Bacillus paralicheniformis strain CamBx3]
ATGTTCAACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTGGGAGATGCGGAGATTCAGGTGATGCGGGAATTGCG
AAAAGAACGACAGGACATTTATTCGAAGCTGCGTGAATTGGATCGGGAGAGTGATCCCGCAATTAACAAAAAGTCTTCAT
TGATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAACATGCCGCTGACAAACATCCGCCCATCAAGACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGTGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACGACATTTATGAAGA
GCTTGATGAAACATCGCCCAGATATTAAAAAGCCTGCCCGCGGCCATTATATTTTGCAAAAACCCAAAAGCCTTTAG
ATGTTCAACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTGGGAGATGCGGAGATTCAGGTGATGCGGGAATTGCG
AAAAGAACGACAGGACATTTATTCGAAGCTGCGTGAATTGGATCGGGAGAGTGATCCCGCAATTAACAAAAAGTCTTCAT
TGATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAACATGCCGCTGACAAACATCCGCCCATCAAGACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGTGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACGACATTTATGAAGA
GCTTGATGAAACATCGCCCAGATATTAAAAAGCCTGCCCGCGGCCATTATATTTTGCAAAAACCCAAAAGCCTTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rok | Bacillus subtilis subsp. subtilis str. 168 |
44.444 |
100 |
0.506 |