Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OPU65_RS03960 Genome accession   NZ_CP110812
Coordinates   784913..785341 (-) Length   142 a.a.
NCBI ID   WP_301441310.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 779913..790341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS03935 (OPU65_03935) tkt 780494..782497 (-) 2004 WP_265626927.1 transketolase -
  OPU65_RS03940 (OPU65_03940) - 782661..782894 (-) 234 WP_265626928.1 DUF896 domain-containing protein -
  OPU65_RS03945 (OPU65_03945) - 782960..783607 (-) 648 WP_265626929.1 recombinase family protein -
  OPU65_RS03950 (OPU65_03950) yneA 783626..783937 (-) 312 WP_020451592.1 cell division suppressor protein YneA -
  OPU65_RS03955 (OPU65_03955) lexA 784089..784712 (+) 624 WP_020451591.1 transcriptional repressor LexA -
  OPU65_RS03960 (OPU65_03960) nucA/comI 784913..785341 (-) 429 WP_301441310.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OPU65_RS03965 (OPU65_03965) - 785651..786490 (-) 840 WP_026579651.1 thymidylate synthase -
  OPU65_RS03970 (OPU65_03970) - 786550..787311 (-) 762 WP_265626930.1 hypothetical protein -
  OPU65_RS03975 (OPU65_03975) - 787484..788914 (+) 1431 WP_265626931.1 IS1182 family transposase -
  OPU65_RS03980 (OPU65_03980) - 788944..789774 (-) 831 WP_065643198.1 prohibitin family protein -
  OPU65_RS03985 (OPU65_03985) - 789767..789907 (-) 141 WP_265626932.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15310.25 Da        Isoelectric Point: 8.4902

>NTDB_id=756342 OPU65_RS03960 WP_301441310.1 784913..785341(-) (nucA/comI) [Bacillus paralicheniformis strain CamBx3]
MIKKWTVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDVLHFPASRYPETGAHISAAIKSGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSGYADGTRILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=756342 OPU65_RS03960 WP_301441310.1 784913..785341(-) (nucA/comI) [Bacillus paralicheniformis strain CamBx3]
ATGATCAAAAAATGGACGGTTCATCTGCTGTTTTCCGCATTGGTGCTGCTCGGGCTTTCGGGAGGGGCTGCATATTCTCC
TCAGCATGCCGAAGGCGCTGCAAGGTATGATGACGTATTGCATTTTCCGGCATCGCGCTACCCTGAAACCGGTGCTCATA
TAAGCGCTGCAATCAAATCGGGCCATTCAGATGTCTGCACAATTGAAAGATCGGGAGCGGATAAGCGCCGTCAGGAATCA
TTAAAGGGGATTCCGACCAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGAGGAAAAGGAGC
GTCGGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGTTCCTGGGTCGGGAACAGGCTGAGCGGTTACGCTGACG
GGACGAGAATTTTGTTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

88.732

0.521