Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OPU65_RS02110 Genome accession   NZ_CP110812
Coordinates   408148..408744 (-) Length   198 a.a.
NCBI ID   WP_265626617.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 403148..413744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS02090 (OPU65_02090) - 403522..404220 (+) 699 WP_243941031.1 DnaD domain-containing protein -
  OPU65_RS02095 (OPU65_02095) nth 404237..404899 (+) 663 WP_265626614.1 endonuclease III -
  OPU65_RS02100 (OPU65_02100) - 404896..405399 (+) 504 WP_409365383.1 YpoC family protein -
  OPU65_RS02105 (OPU65_02105) - 405420..408089 (-) 2670 WP_265626615.1 PBP1A family penicillin-binding protein -
  OPU65_RS02110 (OPU65_02110) recU 408148..408744 (-) 597 WP_265626617.1 Holliday junction resolvase RecU Machinery gene
  OPU65_RS02115 (OPU65_02115) - 408799..409758 (+) 960 WP_409365384.1 DUF2515 domain-containing protein -
  OPU65_RS02120 (OPU65_02120) sspM 409790..409894 (-) 105 WP_025811234.1 acid-soluble spore protein SspM -
  OPU65_RS02125 (OPU65_02125) - 410094..410321 (+) 228 WP_165427381.1 YppD family protein -
  OPU65_RS02130 (OPU65_02130) - 410379..410750 (+) 372 WP_322784715.1 YppE family protein -
  OPU65_RS02135 (OPU65_02135) - 410986..411186 (-) 201 WP_011198064.1 YppF family protein -
  OPU65_RS02140 (OPU65_02140) - 411365..411811 (+) 447 WP_265626623.1 YppG family protein -
  OPU65_RS02145 (OPU65_02145) - 411830..412249 (-) 420 WP_243941019.1 Hsp20/alpha crystallin family protein -
  OPU65_RS02150 (OPU65_02150) - 412425..412931 (+) 507 WP_243941017.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23129.19 Da        Isoelectric Point: 9.2154

>NTDB_id=756341 OPU65_RS02110 WP_265626617.1 408148..408744(-) (recU) [Bacillus paralicheniformis strain CamBx3]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAENLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=756341 OPU65_RS02110 WP_265626617.1 408148..408744(-) (recU) [Bacillus paralicheniformis strain CamBx3]
GTGATTCGTTACCCGAACGGCAAATCGTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTTCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTGATCAAGGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACGAAGAGCCGGACCTC
CTTTCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAATTTATTTTATTTCTGGGAGCGCAAAAAACAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

81.592

100

0.828