Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OPU65_RS00305 Genome accession   NZ_CP110812
Coordinates   51949..52719 (+) Length   256 a.a.
NCBI ID   WP_265626284.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 46949..57719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS00275 (OPU65_00275) - 47292..49346 (+) 2055 WP_223254788.1 HD family phosphohydrolase -
  OPU65_RS00280 (OPU65_00280) ybeY 49343..49819 (+) 477 WP_075752265.1 rRNA maturation RNase YbeY -
  OPU65_RS00285 (OPU65_00285) - 49797..50177 (+) 381 WP_265626281.1 diacylglycerol kinase family protein -
  OPU65_RS00290 (OPU65_00290) - 50310..50720 (+) 411 WP_065644190.1 cytidine deaminase -
  OPU65_RS00295 (OPU65_00295) era 50701..51606 (+) 906 WP_023855242.1 GTPase Era -
  OPU65_RS00300 (OPU65_00300) - 51768..51911 (+) 144 WP_003183626.1 YqzL family protein -
  OPU65_RS00305 (OPU65_00305) recO 51949..52719 (+) 771 WP_265626284.1 DNA repair protein RecO Machinery gene
  OPU65_RS00310 (OPU65_00310) glyQ 53051..53938 (+) 888 WP_265626285.1 glycine--tRNA ligase subunit alpha -
  OPU65_RS00315 (OPU65_00315) glyS 53931..55970 (+) 2040 WP_265626286.1 glycine--tRNA ligase subunit beta -
  OPU65_RS00320 (OPU65_00320) - 56168..56806 (+) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  OPU65_RS00325 (OPU65_00325) - 56831..57643 (+) 813 WP_065644186.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29520.18 Da        Isoelectric Point: 8.3165

>NTDB_id=756333 OPU65_RS00305 WP_265626284.1 51949..52719(+) (recO) [Bacillus paralicheniformis strain CamBx3]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRH
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLDDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGHVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=756333 OPU65_RS00305 WP_265626284.1 51949..52719(+) (recO) [Bacillus paralicheniformis strain CamBx3]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAATGACTATGGTGAAACAAATAAAATCATTACGCTGTTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCTTCTTTTTTATTCCGCAAATCATCCGGTCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGCAT
ATCCGCGAGGATCTGTTTTTAACAGCATATGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
AAATCCGTTTTTATTTGAGCTGCTTCTTCAGTCGATGAGGAGGCTCGATGACGGTACAGATCCCGACATTATCGCCAACC
TTATCGAAGTTAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGGCTGTTTTTTTATTTTGACCTGTCAAGGCTCGGACATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTCATTCAGACGTACTATGACGAGTACTCAGGGATATACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.344

100

0.773