Detailed information NTG0756222

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP60_RS07365
• Genome accession: NZ_CP124415
• Coordinates: 1509759..1510751 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0223
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1504759..1515751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP60_RS07345 (QJP60_07345)	ygbM	1505397..1506173 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP60_RS07350 (QJP60_07350)	ygbN	1506262..1507626 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP60_RS07355 (QJP60_07355)	-	1507769..1508812 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP60_RS07360 (QJP60_07360)	-	1509037..1509588 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP60_RS07365 (QJP60_07365)	rpoS	1509759..1510751 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP60_RS07370 (QJP60_07370)	nlpD	1510814..1511908 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP60_RS07375 (QJP60_07375)	pcm	1512093..1512719 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP60_RS07380 (QJP60_07380)	surE	1512713..1513474 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP60_RS07385 (QJP60_07385)	truD	1513455..1514504 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP60_RS07390 (QJP60_07390)	ispF	1514501..1514980 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP60_RS07395 (QJP60_07395)	ispD	1514980..1515690 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=756222 QJP60_RS07365 WP_000081550.1 1509759..1510751(-) (rpoS) [Escherichia coli strain AVS0223]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=756222 QJP60_RS07365 WP_000081550.1 1509759..1510751(-) (rpoS) [Escherichia coli strain AVS0223]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715