Detailed information NTG0756137

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP61_RS07390
• Genome accession: NZ_CP124410
• Coordinates: 1513289..1514281 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0543
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1508289..1519281

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP61_RS07370 (QJP61_07370)	ygbM	1508927..1509703 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP61_RS07375 (QJP61_07375)	ygbN	1509792..1511156 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP61_RS07380 (QJP61_07380)	-	1511299..1512342 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP61_RS07385 (QJP61_07385)	-	1512567..1513118 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP61_RS07390 (QJP61_07390)	rpoS	1513289..1514281 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP61_RS07395 (QJP61_07395)	nlpD	1514344..1515438 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP61_RS07400 (QJP61_07400)	pcm	1515623..1516249 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP61_RS07405 (QJP61_07405)	surE	1516243..1517004 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP61_RS07410 (QJP61_07410)	truD	1516985..1518034 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP61_RS07415 (QJP61_07415)	ispF	1518031..1518510 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP61_RS07420 (QJP61_07420)	ispD	1518510..1519220 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=756137 QJP61_RS07390 WP_000081550.1 1513289..1514281(-) (rpoS) [Escherichia coli strain AVS0543]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=756137 QJP61_RS07390 WP_000081550.1 1513289..1514281(-) (rpoS) [Escherichia coli strain AVS0543]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715