Detailed information NTG0756053

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJB05_RS07290
• Genome accession: NZ_CP124405
• Coordinates: 1497879..1498871 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0935
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1492879..1503871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJB05_RS07270 (QJB05_07270)	ygbM	1493517..1494293 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJB05_RS07275 (QJB05_07275)	ygbN	1494382..1495746 (+)	1365	WP_000104433.1	GntP family transporter	-
QJB05_RS07280 (QJB05_07280)	-	1495889..1496932 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJB05_RS07285 (QJB05_07285)	-	1497157..1497708 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJB05_RS07290 (QJB05_07290)	rpoS	1497879..1498871 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJB05_RS07295 (QJB05_07295)	nlpD	1498934..1500028 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJB05_RS07300 (QJB05_07300)	pcm	1500213..1500839 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJB05_RS07305 (QJB05_07305)	surE	1500833..1501594 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJB05_RS07310 (QJB05_07310)	truD	1501575..1502624 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJB05_RS07315 (QJB05_07315)	ispF	1502621..1503100 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJB05_RS07320 (QJB05_07320)	ispD	1503100..1503810 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=756053 QJB05_RS07290 WP_000081550.1 1497879..1498871(-) (rpoS) [Escherichia coli strain AVS0935]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=756053 QJB05_RS07290 WP_000081550.1 1497879..1498871(-) (rpoS) [Escherichia coli strain AVS0935]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715