Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OPR78_RS00610 Genome accession   NZ_CP110775
Coordinates   96174..96788 (+) Length   204 a.a.
NCBI ID   WP_071681457.1    Uniprot ID   -
Organism   Citrobacter freundii strain Cf-Emp     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 91174..101788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPR78_RS00590 (OPR78_00590) - 91541..93301 (-) 1761 WP_003035878.1 Lon protease family protein -
  OPR78_RS00595 (OPR78_00595) matP 93487..93939 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  OPR78_RS00600 (OPR78_00600) ompA 94031..95089 (-) 1059 WP_003836839.1 porin OmpA -
  OPR78_RS00605 (OPR78_00605) sulA 95447..95956 (-) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  OPR78_RS00610 (OPR78_00610) sxy/tfoX 96174..96788 (+) 615 WP_071681457.1 TfoX/Sxy family DNA transformation protein Regulator
  OPR78_RS00615 (OPR78_00615) yccS 96766..98919 (-) 2154 WP_032941200.1 YccS family putative transporter -
  OPR78_RS00620 (OPR78_00620) - 98938..99384 (-) 447 WP_003035892.1 YccF domain-containing protein -
  OPR78_RS00625 (OPR78_00625) helD 99510..101564 (+) 2055 WP_044700756.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23238.68 Da        Isoelectric Point: 8.6049

>NTDB_id=756030 OPR78_RS00610 WP_071681457.1 96174..96788(+) (sxy/tfoX) [Citrobacter freundii strain Cf-Emp]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGIMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=756030 OPR78_RS00610 WP_071681457.1 96174..96788(+) (sxy/tfoX) [Citrobacter freundii strain Cf-Emp]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATTTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGATTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686