Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BBP27_RS08780 Genome accession   NZ_CP110721
Coordinates   1863990..1865522 (-) Length   510 a.a.
NCBI ID   WP_188211337.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1858990..1870522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS08760 - 1859704..1860624 (+) 921 WP_188211340.1 patatin-like phospholipase family protein -
  BBP27_RS08765 - 1860733..1862589 (+) 1857 WP_188211339.1 RNB domain-containing ribonuclease -
  BBP27_RS08770 - 1862725..1862952 (+) 228 WP_003681131.1 exodeoxyribonuclease VII small subunit -
  BBP27_RS08775 - 1862936..1863832 (+) 897 WP_188211338.1 polyprenyl synthetase family protein -
  BBP27_RS08780 pilA 1863990..1865522 (-) 1533 WP_188211337.1 signal recognition particle-docking protein FtsY Machinery gene
  BBP27_RS08785 msrAB 1865668..1867236 (+) 1569 WP_188211336.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  BBP27_RS08790 purB 1867367..1868737 (-) 1371 WP_036492421.1 adenylosuccinate lyase -
  BBP27_RS08795 - 1868948..1869388 (+) 441 WP_049323011.1 surface-adhesin E family protein -
  BBP27_RS08800 - 1869722..1870291 (-) 570 WP_188211361.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54743.75 Da        Isoelectric Point: 4.1706

>NTDB_id=756014 BBP27_RS08780 WP_188211337.1 1863990..1865522(-) (pilA) [Neisseria sp. RH3002v2g]
MFSFFRRKKKQETPAPEEAQVQETAAKVESEVAQVVENIKEDAESLTESVKGHVESVVESAVETVSETVEQVWEALTEMP
SETVEKVEEHVEAAKEAAVETVSEAVEQVQETVAEMPSEAADAVEEVAEQAEAVKESAVETVSEAVEQIQETVAEMPSEV
AEAVEEAVEQAEAVKEEAVEAVSEAGEQVQEAVAETPAEAPTPVEEPKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=756014 BBP27_RS08780 WP_188211337.1 1863990..1865522(-) (pilA) [Neisseria sp. RH3002v2g]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAACGGAAAGCGTCAAAGGGCATG
TTGAATCAGTTGTTGAATCGGCTGTTGAAACTGTCAGCGAAACCGTCGAGCAGGTTTGGGAGGCTTTGACCGAAATGCCG
TCTGAAACAGTTGAAAAAGTAGAAGAACACGTTGAAGCGGCAAAAGAAGCGGCTGTTGAAACCGTCAGCGAAGCTGTTGA
GCAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAGCGGCCGATGCTGTTGAGGAAGTAGCGGAACAGGCTGAAGCAG
TAAAAGAATCGGCCGTTGAAACCGTCAGCGAGGCTGTTGAACAGATTCAAGAAACCGTTGCCGAGATGCCGTCTGAAGTG
GCTGAAGCTGTTGAGGAAGCAGTAGAACAGGCCGAAGCGGTCAAAGAAGAAGCTGTTGAGGCAGTTAGCGAAGCTGGCGA
GCAAGTTCAAGAAGCTGTTGCGGAAACACCGGCTGAAGCCCCTACTCCGGTAGAAGAACCCAAGCTCGGTTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCACGCGACAAAATGGCAAAATCATTGGCCGGCGTGTTCGGTGGCGGACAAATCGAC
GAGGATTTGTACGAAGAGCTGGAAACCGTGCTGATTACCAGCGATATGGGCATGGAAGCTACCGAATACTTGATGAAAGA
CGTGCGCGACCGTGTCAGCCTTAAAGGCCTCAAAGACGGCAACGAATTGCGCGGTGCGCTGAAAGATGCGCTGTACGATT
TGATTAAGCCTCTGGAGAAGCCTTTGGTCTTACCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGC
GCAGGCAAAACCACATCTATCGGCAAATTGGCCAAATACTTCCAAGCGCAGGGCAAATCTGTGCTGCTGGCGGCAGGCGA
TACTTTCCGTGCCGCCGCGCGTGAGCAGCTTCAAGCTTGGGGCGAGCGCAACAATGTAACCGTGATTTCGCAAACTACGG
GTGATTCCGCTGCCGTTTGCTTCGATGCCGTCCAAGCCGCGAAGGCGCGCGGGATCGACATCGTGCTGGCCGATACTGCC
GGCCGCCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGCTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATCGGTCAAAACGCCGTCAACCAAGTGAAAGCCTTTGACGAAGCGC
TGGGTCTGACCGGCCTTATCGTGACCAAGCTAGACGGTACGGCCAAAGGCGGTATCCTTGCCGCGCTTGCCTCCGACCGC
CCTGTTCCTGTCCGCTACATCGGCGTAGGCGAAGGCATCGACGATTTGCGTCCGTTTAATGCCAAAGCGTTTGTGGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

85.122

80.392

0.684