Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BBP27_RS05825 Genome accession   NZ_CP110721
Coordinates   1216288..1218327 (-) Length   679 a.a.
NCBI ID   WP_188211474.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1211288..1223327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS05810 - 1212178..1213614 (+) 1437 WP_188212342.1 transferrin-binding protein-like solute binding protein -
  BBP27_RS05815 - 1213674..1214468 (-) 795 WP_049348902.1 thymidylate synthase -
  BBP27_RS05820 gdhA 1214883..1216217 (+) 1335 WP_049331398.1 NADP-specific glutamate dehydrogenase -
  BBP27_RS05825 recG 1216288..1218327 (-) 2040 WP_188211474.1 ATP-dependent DNA helicase RecG Machinery gene
  BBP27_RS05830 secB 1218429..1218863 (-) 435 WP_003682271.1 protein-export chaperone SecB -
  BBP27_RS05835 grxC 1218885..1219142 (-) 258 WP_003684090.1 glutaredoxin 3 -
  BBP27_RS05840 - 1219380..1220873 (+) 1494 WP_039861979.1 Rne/Rng family ribonuclease -
  BBP27_RS05845 - 1220931..1221599 (-) 669 WP_049352170.1 DUF3108 domain-containing protein -
  BBP27_RS05850 purN 1221630..1222256 (-) 627 WP_128582831.1 phosphoribosylglycinamide formyltransferase -
  BBP27_RS05855 - 1222354..1223172 (-) 819 WP_003745836.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 74970.76 Da        Isoelectric Point: 6.8920

>NTDB_id=756000 BBP27_RS05825 WP_188211474.1 1216288..1218327(-) (recG) [Neisseria sp. RH3002v2g]
MTPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAV
ALGGDGTLTNALRHALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLAEGSVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLEQLQTALPELSIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNSEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=756000 BBP27_RS05825 WP_188211474.1 1216288..1218327(-) (recG) [Neisseria sp. RH3002v2g]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATTACCGATGTTTCCGCCAAGAAACTCGACAAACTCAACCTCCATACCGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCACCAATCGGCG
TGCCGTGTCAGGTCGAGGGAGAAGTCATCCATCAGGAAGTGACATTTAAACCGCGCAAACAGCTGATTGTCCAAATCGCT
GACGGTTCCGGCAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAAACG
CATTCGCGCCGTGGGCGAAATCAAACACGGGTTTCACGGCGACGAGATGATTCACCCTAAAATCCGCGATGCCGAGAGCA
GCGGTTTGGCGGAAAGCCTCACGCCGATTTATCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGTATTATTCAG
ACGGCCTTGGACGTTACACCGCTACACGATACCTTACCCGATGCTTTATTAGGCCGTCTGAAACTGCCACACCTTGCCGA
AAGCCTACGCCTTTTGCATTCGCCGCCGCCGAGTTTCACCATTCATCAACTTTCAGACGGCACGCTGCCCGCATGGCAAC
GGCTCAAATTTGACGAACTTTTGGCACAACAACTTTCCATGCGGCTGGCGCGGCAGAAGCGTGTCAGCGGCACGGCGGTG
GCATTGGGCGGCGACGGTACGTTGACTAATGCACTGCGCCACGCCTTGCCGTTTGCCCTGACCGATGCGCAAGAAAAAGT
TGTTTCCGAAATCTGCCGCGATATGGCGCAAACCCATCCCATGCACCGCCTGTTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATTGTGGCTGCTTTGTCTGCACTGACCGCCATTGAATCCGGCGCGCAGGTGGCTGTAATGGCGCCGACCGAAATCCTT
GCCGAACAGCACTTCATCAAGTTCAAACAATGGCTTGAGCCTTTAGGCCTTGAAGTCGTTTGGCTTTCCGGTAGTCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTTGCCGAAGGCAGTGTCAAAATTGCCGTCGGTACGCACGCCCTGTTTT
CAGACGACGTCGAGTTTCAAAATCTGGGCTTGGTGATTGTAGACGAACAACACCGCTTCGGCGTTGCCCAACGCCTCGCC
CTTAAAAACAAAGGGCGCGACGTCCACCAACTGATGATGTCCGCCACGCCCATTCCGCGTACGCTTGCCATGAGTTTCTT
CGCCGACTTAGACGTGTCTGTTATCGACGAGTTGCCGCCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAACGTTC
GCCGCGCCGAAGTTGAAGGCTTCGTCCTTAATATTTGTCGCAAAGGGCAGCAGGCATACTGGGTTTGTCCGCTGATTGAA
GAGAGCGAAACCTTGCAACTGCAAACCGCTACCGAAACCCTCGAGCAGCTTCAGACGGCCTTACCCGAACTCAGCATTGG
CTTAGTACACGGACGCATGAAAGCCGCCGAAAAAGCCGAAGTCATGGCGGAATTTGCCGCAGGCCGTCTGAACGTATTGG
TAGCCACTACCGTTATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTCATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGTCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTTCTGTTTGCCGAACC
CTTGAGCGAACTCGCCAAAGCGCGGTTGAAAGTTATCTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTTGGCGCGCGCCAAAGCGGCGTTCCCATGCTGCGTTTTGCCAACCTCGAAGAAGAC
TTACACCTTTTAGAACAAGCGCGCGAAATTGCCCCTTTGCTGATTGAACAAAACTCTGAAATCGTCGAAGCGCATTTGGC
GAGGTGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(261-418)

RecG wedge domain (RecG_wedge)

(14-163)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.814

100

0.938