Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   BBP27_RS02100 Genome accession   NZ_CP110721
Coordinates   447867..449012 (+) Length   381 a.a.
NCBI ID   WP_188212155.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 442571..453562 447867..449012 within 0


Gene organization within MGE regions


Location: 442571..453562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS02060 - 442571..443110 (+) 540 WP_049348370.1 gamma carbonic anhydrase family protein -
  BBP27_RS02065 - 443125..443724 (+) 600 WP_188212160.1 Maf family protein -
  BBP27_RS02070 rsmA 443813..444592 (+) 780 WP_188212159.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  BBP27_RS02075 - 444600..444872 (+) 273 WP_188212158.1 hypothetical protein -
  BBP27_RS02080 - 444923..445651 (+) 729 WP_003747231.1 amino acid ABC transporter ATP-binding protein -
  BBP27_RS02085 - 445715..446074 (+) 360 WP_049322913.1 hypothetical protein -
  BBP27_RS02090 - 446079..446531 (+) 453 WP_188212157.1 protein YgfX -
  BBP27_RS02095 folC 446570..447853 (+) 1284 WP_188212156.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  BBP27_RS02100 tpc 447867..449012 (+) 1146 WP_188212155.1 cell division protein FtsN Machinery gene
  BBP27_RS02105 - 449005..449508 (+) 504 WP_188212154.1 CvpA family protein -
  BBP27_RS02110 purF 449662..451206 (+) 1545 WP_188212153.1 amidophosphoribosyltransferase -
  BBP27_RS02115 greB 451281..451772 (+) 492 WP_049322920.1 transcription elongation factor GreB -
  BBP27_RS02120 plsY 451849..452460 (-) 612 WP_188212152.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  BBP27_RS02125 folB 452518..452868 (+) 351 WP_188212151.1 dihydroneopterin aldolase -
  BBP27_RS02130 - 452915..453562 (+) 648 WP_070592052.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41766.79 Da        Isoelectric Point: 9.9049

>NTDB_id=755986 BBP27_RS02100 WP_188212155.1 447867..449012(+) (tpc) [Neisseria sp. RH3002v2g]
MSDNKQKETPNGYDLDGYEQLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQTQVKTADESSKAVVLE
PNKEDVAMAEEAARHADAEAQSKPQNAGDEEDNAPVEVLKPSRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAARKAQAQQEADEKENALAAKKRALQARAEKAEREAAAERNKLAQLEKAEKAIAERKS
AKNSKDSVKDKAEPAKKAEAKVEKPKNEKAKPETAKAEKADKVKTAEKLSEKAKPKAEKEKAEAKPAKKAAIQAGYAEKE
RAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=755986 BBP27_RS02100 WP_188212155.1 447867..449012(+) (tpc) [Neisseria sp. RH3002v2g]
ATGTCCGACAATAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACAACTCAAACGCCGCAATCGCCG
CCGCTTGGTTTTGGCCTCCGGCTTGGTGGTGGCTTCAGGTATGCTGTTCGGTCTGGCGCTGACATCGGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCCCCTGTCGGTCAGACTCAAGTCAAAACGGCTGATGAGTCCAGCAAGGCTGTTGTCCTAGAG
CCGAATAAAGAGGATGTCGCGATGGCTGAAGAGGCAGCCCGCCATGCGGATGCCGAAGCGCAAAGCAAACCTCAAAATGC
CGGCGACGAAGAAGACAATGCACCGGTCGAAGTGCTGAAGCCGAGCCGTGAATCTGCTCCCGAAGATGTCGGCGAGCCGT
TGGTTTTGATTAACGATACTTTGGATGACGGCAATATTAAAGGTTTGGAAGAGTCTGAGCGTATTCAACGAGCAGAAGCC
GCCAAACGCGAAGCTGCCGAACGCCGAGCCGAGGAACGCCGCCAACGTCAGGCTGAACAACGTGCTGCGGCACGCAAGGC
ACAAGCCCAACAGGAAGCGGATGAAAAAGAAAACGCATTGGCCGCTAAAAAACGCGCACTTCAAGCGCGCGCTGAAAAAG
CAGAGCGTGAAGCCGCTGCCGAGCGCAATAAATTGGCTCAATTGGAAAAGGCAGAGAAAGCCATTGCCGAGCGTAAATCT
GCCAAAAATAGCAAAGACAGCGTAAAAGACAAGGCCGAACCTGCTAAGAAAGCAGAAGCCAAAGTTGAAAAACCAAAAAA
TGAAAAGGCTAAACCGGAAACAGCCAAAGCTGAAAAAGCAGATAAGGTAAAAACTGCCGAGAAGCTGTCTGAAAAAGCCA
AACCGAAAGCTGAAAAAGAAAAAGCAGAAGCCAAACCTGCGAAAAAAGCCGCCATTCAGGCTGGTTATGCTGAAAAAGAA
CGCGCACAAAGCCTGCAACGTAAAATGAAAGCCGCAGGTATCGATTCGACCATTACTGAAGTGATGACCGATAAAGGTAA
GGTGTATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCCGAGCGTGATTTGAACAAATTGCGTGTACATGGCA
TTGCCGGTCAGGTAACCAGTGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(308-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

49.235

100

0.507