Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BBP27_RS01800 Genome accession   NZ_CP110721
Coordinates   384084..385460 (-) Length   458 a.a.
NCBI ID   WP_188212190.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 379084..390460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS01775 - 380955..381572 (-) 618 WP_188212192.1 4'-phosphopantetheinyl transferase superfamily protein -
  BBP27_RS01780 - 381625..382137 (-) 513 WP_223168965.1 hypothetical protein -
  BBP27_RS01790 - 382510..383070 (+) 561 WP_188212191.1 pseudouridine synthase -
  BBP27_RS01795 - 383126..383932 (-) 807 WP_003685136.1 DUF4198 domain-containing protein -
  BBP27_RS01800 radA 384084..385460 (-) 1377 WP_188212190.1 DNA repair protein RadA Machinery gene
  BBP27_RS01805 - 385556..387028 (-) 1473 WP_188212189.1 S41 family peptidase -
  BBP27_RS01810 - 387243..389162 (-) 1920 WP_188212188.1 peptidoglycan DD-metalloendopeptidase family protein -
  BBP27_RS01815 - 389336..389881 (+) 546 WP_188212187.1 CreA family protein -
  BBP27_RS01820 - 389911..390459 (+) 549 WP_003747325.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49286.72 Da        Isoelectric Point: 7.0601

>NTDB_id=755984 BBP27_RS01800 WP_188212190.1 384084..385460(-) (radA) [Neisseria sp. RH3002v2g]
MAKAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=755984 BBP27_RS01800 WP_188212190.1 384084..385460(-) (radA) [Neisseria sp. RH3002v2g]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGTTCCGAATGCGGCGGTACTTCCCCGAAATGGCAGGGTAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTGGCCGCACCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTCTCCGCCGTTACCGCGACCGAAGTGCCACGCAATCCGACCGGCATGGGAGAACTTGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTTGGCGGCGACCCCGGTATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGTGAAGAATCCGCCCAACAGGTCGCCC
TGCGCGCACAACGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTTATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGCGCCGCCCAACTGACGCGCATGGCGAAACAAATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGTGCGGCAAACGAACTGGGCGTATTCGCCAT
GACCGAAAACGGTTTAAAAGGCGTATCCAATCCGTCCGCCATCTTCCTCGCCAGCTACCGAGACGACACGCCTGGCTCGT
GCGTTTTGGTCACGCAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGATGCGCACGGCTTCACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGCCACGGCGGCATCGC
CTGCTTCGACCAAGACGTGTTCCTCAACGCCGTCGGCGGCGTCAAAATCGGCGAACCCGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCGCTGCCCGAAAAAATGGTTGCCTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCAAACCTGAAAATCTACGGCGTCAGCAGTTTGCAGGAAGCGATTGACGTCT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus mitis NCTC 12261

47.672

98.472

0.469
  radA Streptococcus pneumoniae Rx1

47.345

98.69

0.467
  radA Streptococcus pneumoniae D39

47.345

98.69

0.467
  radA Streptococcus pneumoniae R6

47.345

98.69

0.467
  radA Streptococcus pneumoniae TIGR4

47.345

98.69

0.467
  radA Streptococcus mitis SK321

47.228

98.472

0.465