Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QJP80_RS09015 Genome accession   NZ_CP124400
Coordinates   1867492..1868739 (+) Length   415 a.a.
NCBI ID   WP_032152724.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0528     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1862492..1873739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP80_RS09000 (QJP80_09000) - 1863007..1864683 (+) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -
  QJP80_RS09005 (QJP80_09005) kdsB 1864693..1865433 (+) 741 WP_163436372.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QJP80_RS09010 (QJP80_09010) - 1865430..1867457 (+) 2028 WP_072649095.1 capsular polysaccharide biosynthesis protein -
  QJP80_RS09015 (QJP80_09015) kpsS 1867492..1868739 (+) 1248 WP_032152724.1 capsular biosynthesis protein Regulator
  QJP80_RS09020 (QJP80_09020) - 1869231..1869860 (-) 630 WP_021521026.1 CatB-related O-acetyltransferase -
  QJP80_RS09025 (QJP80_09025) - 1869857..1872139 (-) 2283 WP_168350229.1 hypothetical protein -
  QJP80_RS09030 (QJP80_09030) galE 1872231..1873250 (-) 1020 WP_021521028.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49399.08 Da        Isoelectric Point: 10.1281

>NTDB_id=755973 QJP80_RS09015 WP_032152724.1 1867492..1868739(+) (kpsS) [Escherichia coli strain AVS0528]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGDVKKGLVWII
RTDFSYIKNNTIQSP

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=755973 QJP80_RS09015 WP_032152724.1 1867492..1868739(+) (kpsS) [Escherichia coli strain AVS0528]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTTCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCTAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTTAAGACACAGGTTAATGGGGTTTATTATGGGGATGTAAAGAAAGGGTTAGTGTGGATTATA
AGAACAGATTTTTCTTACATCAAAAATAATACAATACAATCACCGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

94.217

0.376