Detailed information NTG0755968

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP80_RS07335
• Genome accession: NZ_CP124400
• Coordinates: 1506181..1507173 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0528
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1501181..1512173

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP80_RS07315 (QJP80_07315)	ygbM	1501819..1502595 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP80_RS07320 (QJP80_07320)	ygbN	1502684..1504048 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP80_RS07325 (QJP80_07325)	-	1504191..1505234 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP80_RS07330 (QJP80_07330)	-	1505459..1506010 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP80_RS07335 (QJP80_07335)	rpoS	1506181..1507173 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP80_RS07340 (QJP80_07340)	nlpD	1507236..1508330 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP80_RS07345 (QJP80_07345)	pcm	1508515..1509141 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP80_RS07350 (QJP80_07350)	surE	1509135..1509896 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP80_RS07355 (QJP80_07355)	truD	1509877..1510926 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP80_RS07360 (QJP80_07360)	ispF	1510923..1511402 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP80_RS07365 (QJP80_07365)	ispD	1511402..1512112 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=755968 QJP80_RS07335 WP_000081550.1 1506181..1507173(-) (rpoS) [Escherichia coli strain AVS0528]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=755968 QJP80_RS07335 WP_000081550.1 1506181..1507173(-) (rpoS) [Escherichia coli strain AVS0528]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715