Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   OPR71_RS22925 Genome accession   NZ_CP110671
Coordinates   1558293..1560338 (-) Length   681 a.a.
NCBI ID   WP_053303516.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain AUSMDU00064140     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553293..1565338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPR71_RS22915 (OPR71_22915) ylqF 1555726..1556670 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  OPR71_RS22920 (OPR71_22920) cqsA 1557008..1558189 (+) 1182 WP_017635350.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OPR71_RS22925 (OPR71_22925) cqsS 1558293..1560338 (-) 2046 WP_053303516.1 response regulator Regulator
  OPR71_RS22930 (OPR71_22930) - 1560702..1561319 (+) 618 WP_025767847.1 HAD family hydrolase -
  OPR71_RS22935 (OPR71_22935) - 1561410..1561958 (-) 549 WP_005376525.1 GNAT family N-acetyltransferase -
  OPR71_RS22940 (OPR71_22940) - 1562230..1563354 (+) 1125 WP_017821552.1 acyl-CoA desaturase -
  OPR71_RS22945 (OPR71_22945) dcuC 1563714..1565081 (+) 1368 WP_005376528.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78216.77 Da        Isoelectric Point: 5.2226

>NTDB_id=755933 OPR71_RS22925 WP_053303516.1 1558293..1560338(-) (cqsS) [Vibrio alginolyticus strain AUSMDU00064140]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWEFAFPQAYENLPLRLFCSLLFFGIIFRNRLSSTWRDYVPIYYQVTIT
LCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSILPNMKEAGKEQYVMSVEDVTLLREVSQDAMN
IIQSGNETIDLLLTSIDENRVSRSSFKKYSAHSVVEQAIESFSYKRATDRFAISLDARSEFEFLGSDTLLKYVMYNLFKN
AFHHRKSEDFHIHVSMISSERFNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPLTTSDTVTEIKNDLTKLKTILTVTSQDILVSKVTDISRFMGFDSTILDVNQVLKKKEYEFEFDLIFIDLE
SLDPRANQLDRLESLLSFTEARIVYLFEHHPTQRARKAAYEPIWIETQAWLLNTKPTIERLLYDSSYVSTPTASVTLDNS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQEDVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=755933 OPR71_RS22925 WP_053303516.1 1558293..1560338(-) (cqsS) [Vibrio alginolyticus strain AUSMDU00064140]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCAAACCTAACTCTCGTTGGTTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTCTGGGAGTTTGCCTTTCCACAGGCTTATGAAAATTTACCTCTTAGATTGTTTTGCTCGTTATTGT
TTTTCGGCATCATTTTTAGAAACCGCTTATCATCGACTTGGAGAGATTATGTTCCTATTTACTACCAAGTGACGATAACG
CTGTGCTTACCGTTTTTCTTTTTTTATATGTTACTGATGAATGACTGGTCCAATGTATGGGTTATGTCGTTTATGTCTGC
AATTTTCTTACACATTTTACTGGTTCATGTTACTAGGGTCATGTTTGCTCAAACCTTTGCTGGGATAGGTTTAGCAACAT
TCTTCGCTTGGGTTGCAAAAGGGTTCCATCTTGACTTGACCATGGATTGGACTCATGTGCCAATCTTTCTGTTTATTTAT
GTCTTCGGTAATTTGTTCTATTTTCGTAACCAAGTTGAACATGAAGCGAAAGTCTCGCTGGCAAAATCATTCGGGGCAGG
GATTGCACATGAAATGCGTAACCCGTTGAGTGGGCTTTGCACTTCAATAGATGTTATCCAGTCGATCTTGCCCAACATGA
AAGAGGCAGGAAAAGAGCAGTACGTCATGAGTGTAGAAGATGTCACCTTATTACGTGAAGTGAGTCAGGATGCAATGAAC
ATTATCCAATCGGGTAATGAAACCATCGATTTATTGCTGACTTCGATTGATGAAAATCGAGTTTCTCGTTCTAGCTTCAA
AAAATATTCAGCTCACTCGGTCGTTGAACAGGCAATTGAAAGCTTCAGTTATAAACGTGCCACTGATCGATTTGCCATAT
CGTTGGATGCGAGAAGTGAGTTTGAGTTTCTAGGTAGTGATACGCTGCTTAAATACGTTATGTATAATCTTTTCAAGAAT
GCCTTCCATCACCGTAAATCTGAAGATTTTCACATACATGTATCCATGATAAGTTCAGAACGCTTTAATCAAATTGTTGT
AACCGATAATGGTGCTGGTATTGCTCCTGATGTTCTACGCAATATCTTTCAAGACTTTTACACCACCGGCAAATCAGGAA
GTTATGGTTTGGGCCTACCGTTTTGTAAAAAAGTCATGCGTTCATTTGGGGGGAACATTGAGTGTCAATCTCAGTTAGGG
GAGTGGTCTCAATTTACGTTAACTTTCCCACTAACGACATCTGATACCGTTACTGAAATCAAAAACGATCTGACTAAACT
CAAAACCATTCTAACGGTGACTAGCCAAGATATCTTGGTGTCTAAAGTAACAGATATTAGCCGTTTTATGGGCTTTGACT
CGACAATTTTAGATGTCAACCAAGTACTCAAAAAGAAAGAGTACGAGTTCGAATTCGATCTGATTTTTATCGATCTTGAG
AGCTTAGATCCAAGAGCAAACCAATTGGATAGATTAGAATCTCTCTTGTCTTTCACTGAAGCACGCATAGTTTATCTTTT
TGAGCATCATCCGACTCAGAGAGCACGTAAGGCTGCATATGAACCTATTTGGATCGAAACGCAAGCCTGGTTATTGAATA
CTAAACCAACTATTGAGCGTCTCTTATATGATTCAAGCTATGTATCGACACCAACGGCCTCGGTGACGTTAGATAATTCA
AATAAGCGCACAATTATGGTCGTGGATGATAATGAATCTTTGCGTAAATTCACGGCAATGTTACTTGAAAAGCAAGGCTT
TGAAGTGATTCAGAAAGAAGACGGGCAGCAGGCTCTGGATACACTAGAGCAAGAAGATGTTGATCTCATTCTGATGGATA
TCGAAATGCCAATTATGGATGGTGTAGAAGCGTCTAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCACATACAGGGGATAGTTCACCTGTCACGTTGGACAAAATTGGGTCTTCGGGTATGTCTGACTTCATCGTAAAACC
GGCGGATAAAAATCGTTTGTTCGATAAAATCGCAAACTGGATCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-412)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.781

100

0.501