Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OPR71_RS09010 Genome accession   NZ_CP110670
Coordinates   1962637..1964058 (+) Length   473 a.a.
NCBI ID   WP_167415153.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain AUSMDU00064140     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957637..1969058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPR71_RS08990 (OPR71_08990) - 1958118..1958924 (-) 807 WP_213868409.1 adenosylcobinamide-GDP ribazoletransferase -
  OPR71_RS08995 (OPR71_08995) cobT 1958924..1959967 (-) 1044 WP_267922712.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  OPR71_RS09000 (OPR71_09000) - 1960216..1960905 (+) 690 WP_206953236.1 NAD(P)H-binding protein -
  OPR71_RS09005 (OPR71_09005) - 1961106..1962479 (+) 1374 WP_025766775.1 L-cystine transporter -
  OPR71_RS09010 (OPR71_09010) sbcB 1962637..1964058 (+) 1422 WP_167415153.1 exodeoxyribonuclease I Machinery gene
  OPR71_RS09015 (OPR71_09015) - 1964114..1964488 (+) 375 WP_005385452.1 CidA/LrgA family protein -
  OPR71_RS09020 (OPR71_09020) - 1964490..1965167 (+) 678 WP_005385454.1 LrgB family protein -
  OPR71_RS09025 (OPR71_09025) cdd 1965598..1966485 (+) 888 WP_206953233.1 cytidine deaminase -
  OPR71_RS09030 (OPR71_09030) purT 1966629..1967804 (+) 1176 WP_017633939.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OPR71_RS09035 (OPR71_09035) - 1967877..1968527 (-) 651 WP_021707633.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54416.59 Da        Isoelectric Point: 4.8633

>NTDB_id=755913 OPR71_RS09010 WP_167415153.1 1962637..1964058(+) (sbcB) [Vibrio alginolyticus strain AUSMDU00064140]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=755913 OPR71_RS09010 WP_167415153.1 1962637..1964058(+) (sbcB) [Vibrio alginolyticus strain AUSMDU00064140]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACGAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGCGAAACCGATCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795