Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OPR71_RS08020 Genome accession   NZ_CP110670
Coordinates   1733822..1735348 (+) Length   508 a.a.
NCBI ID   WP_085569876.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain AUSMDU00064140     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728822..1740348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPR71_RS07995 (OPR71_07995) - 1729123..1729443 (+) 321 WP_017634929.1 STAS domain-containing protein -
  OPR71_RS08000 (OPR71_08000) - 1729470..1730336 (+) 867 WP_267922613.1 OmpA family protein -
  OPR71_RS08005 (OPR71_08005) - 1730333..1732435 (+) 2103 WP_267922614.1 SLBB domain-containing protein -
  OPR71_RS08010 (OPR71_08010) - 1732435..1733121 (+) 687 WP_005377635.1 AAA family ATPase -
  OPR71_RS08015 (OPR71_08015) - 1733133..1733513 (+) 381 WP_005377636.1 Hpt domain-containing protein -
  OPR71_RS08020 (OPR71_08020) luxO 1733822..1735348 (+) 1527 WP_085569876.1 sigma-54-dependent transcriptional regulator Regulator
  OPR71_RS08025 (OPR71_08025) - 1735323..1736393 (+) 1071 WP_193837381.1 glycosyltransferase family 4 protein -
  OPR71_RS08030 (OPR71_08030) - 1736538..1737722 (+) 1185 WP_053303085.1 glycosyltransferase -
  OPR71_RS08035 (OPR71_08035) - 1737734..1738906 (+) 1173 WP_005377641.1 glycosyltransferase -
  OPR71_RS08040 (OPR71_08040) - 1738899..1740329 (+) 1431 WP_193843857.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56584.50 Da        Isoelectric Point: 5.9083

>NTDB_id=755912 OPR71_RS08020 WP_085569876.1 1733822..1735348(+) (luxO) [Vibrio alginolyticus strain AUSMDU00064140]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPVYTEEPSPSAVEPSITAAELPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=755912 OPR71_RS08020 WP_085569876.1 1733822..1735348(+) (luxO) [Vibrio alginolyticus strain AUSMDU00064140]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACGTCAGTTGCATTGCACCTTAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTATTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGTGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTCACTAAAAAGTCAAAAGTTACGAAAACAACGACACCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAGAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484