Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   OOL18_RS07515 Genome accession   NZ_CP110664
Coordinates   1597916..1598209 (-) Length   97 a.a.
NCBI ID   WP_005598477.1    Uniprot ID   A3N205
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592916..1603209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS07485 artM 1593248..1593931 (-) 684 WP_005605188.1 arginine ABC transporter permease ArtM -
  OOL18_RS07490 artQ 1593931..1594602 (-) 672 WP_005608588.1 arginine ABC transporter permease ArtQ -
  OOL18_RS07495 - 1594608..1595327 (-) 720 WP_005619670.1 transporter substrate-binding domain-containing protein -
  OOL18_RS07500 artP 1595347..1596081 (-) 735 WP_005598473.1 arginine ABC transporter ATP-binding protein ArtP -
  OOL18_RS07505 - 1596306..1596803 (-) 498 WP_005601953.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  OOL18_RS07510 - 1596876..1597838 (+) 963 WP_005619672.1 calcium/sodium antiporter -
  OOL18_RS07515 HI0659 1597916..1598209 (-) 294 WP_005598477.1 helix-turn-helix domain-containing protein Machinery gene
  OOL18_RS07520 - 1598190..1598561 (-) 372 WP_005619674.1 type II toxin-antitoxin system RelE/ParE family toxin -
  OOL18_RS07525 - 1598754..1600505 (+) 1752 WP_237610232.1 protein-disulfide reductase DsbD -
  OOL18_RS07530 - 1600563..1601132 (+) 570 WP_005598484.1 elongation factor P hydroxylase -
  OOL18_RS07535 rsmI 1601176..1602030 (-) 855 WP_005598486.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10935.81 Da        Isoelectric Point: 10.3120

>NTDB_id=755834 OOL18_RS07515 WP_005598477.1 1597916..1598209(-) (HI0659) [Actinobacillus pleuropneumoniae strain AP_123]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=755834 OOL18_RS07515 WP_005598477.1 1597916..1598209(-) (HI0659) [Actinobacillus pleuropneumoniae strain AP_123]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGACTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATTTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N205

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619