Detailed information NTG0755798

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP72_RS07345
• Genome accession: NZ_CP124392
• Coordinates: 1504664..1505656 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0968
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1499664..1510656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP72_RS07325 (QJP72_07325)	ygbM	1500302..1501078 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP72_RS07330 (QJP72_07330)	ygbN	1501167..1502531 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP72_RS07335 (QJP72_07335)	-	1502674..1503717 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP72_RS07340 (QJP72_07340)	-	1503942..1504493 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP72_RS07345 (QJP72_07345)	rpoS	1504664..1505656 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP72_RS07350 (QJP72_07350)	nlpD	1505719..1506813 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP72_RS07355 (QJP72_07355)	pcm	1506998..1507624 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP72_RS07360 (QJP72_07360)	surE	1507618..1508379 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP72_RS07365 (QJP72_07365)	truD	1508360..1509409 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP72_RS07370 (QJP72_07370)	ispF	1509406..1509885 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP72_RS07375 (QJP72_07375)	ispD	1509885..1510595 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=755798 QJP72_RS07345 WP_000081550.1 1504664..1505656(-) (rpoS) [Escherichia coli strain AVS0968]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=755798 QJP72_RS07345 WP_000081550.1 1504664..1505656(-) (rpoS) [Escherichia coli strain AVS0968]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715