Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OOK64_RS20190 Genome accession   NZ_CP110657
Coordinates   4133442..4134047 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain S2122     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4128442..4139047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK64_RS20170 (OOK64_20170) - 4128837..4130597 (-) 1761 WP_000156454.1 AAA family ATPase -
  OOK64_RS20175 (OOK64_20175) matP 4130783..4131235 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  OOK64_RS20180 (OOK64_20180) ompA 4131307..4132359 (-) 1053 WP_001674965.1 porin OmpA -
  OOK64_RS20185 (OOK64_20185) sulA 4132716..4133225 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  OOK64_RS20190 (OOK64_20190) sxy/tfoX 4133442..4134047 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  OOK64_RS20195 (OOK64_20195) yccS 4134034..4136187 (-) 2154 WP_000950880.1 YccS family putative transporter -
  OOK64_RS20200 (OOK64_20200) - 4136206..4136652 (-) 447 WP_001261222.1 YccF domain-containing protein -
  OOK64_RS20205 (OOK64_20205) helD 4136776..4138830 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=755795 OOK64_RS20190 WP_001202375.1 4133442..4134047(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain S2122]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=755795 OOK64_RS20190 WP_001202375.1 4133442..4134047(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain S2122]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751