Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ONZ54_RS01810 Genome accession   NZ_CP110645
Coordinates   365779..367218 (+) Length   479 a.a.
NCBI ID   WP_059112774.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain AS3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360779..372218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONZ54_RS01780 (ONZ54_01780) mlaF 361356..362156 (-) 801 WP_011898278.1 phospholipid ABC transporter ATP-binding protein MlaF -
  ONZ54_RS01785 (ONZ54_01785) - 362364..363359 (+) 996 WP_011898279.1 KpsF/GutQ family sugar-phosphate isomerase -
  ONZ54_RS01790 (ONZ54_01790) kdsC 363359..363913 (+) 555 WP_005314419.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ONZ54_RS01795 (ONZ54_01795) lptC 363910..364470 (+) 561 WP_005314417.1 LPS export ABC transporter periplasmic protein LptC -
  ONZ54_RS01800 (ONZ54_01800) lptA 364457..364984 (+) 528 WP_005314414.1 lipopolysaccharide transport periplasmic protein LptA -
  ONZ54_RS01805 (ONZ54_01805) lptB 364988..365713 (+) 726 WP_005314412.1 LPS export ABC transporter ATP-binding protein -
  ONZ54_RS01810 (ONZ54_01810) rpoN/rpoN1 365779..367218 (+) 1440 WP_059112774.1 RNA polymerase factor sigma-54 Machinery gene
  ONZ54_RS01815 (ONZ54_01815) hpf 367240..367527 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  ONZ54_RS01820 (ONZ54_01820) ptsN 367530..367976 (+) 447 WP_271787332.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ONZ54_RS01825 (ONZ54_01825) rapZ 368019..368885 (+) 867 WP_005314405.1 RNase adapter RapZ -
  ONZ54_RS01830 (ONZ54_01830) npr 368906..369178 (+) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  ONZ54_RS01835 (ONZ54_01835) - 369197..371101 (-) 1905 WP_271787333.1 BglG family transcription antiterminator -
  ONZ54_RS01840 (ONZ54_01840) dagF 371205..371945 (-) 741 WP_271787334.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53863.79 Da        Isoelectric Point: 4.3459

>NTDB_id=755611 ONZ54_RS01810 WP_059112774.1 365779..367218(+) (rpoN/rpoN1) [Aeromonas salmonicida strain AS3]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPEEPVDDSQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLNEAREVIKEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVATCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=755611 ONZ54_RS01810 WP_059112774.1 365779..367218(+) (rpoN/rpoN1) [Aeromonas salmonicida strain AS3]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAATCCTTTGCTTGAGCAAGAGGAGAATGACG
TTCAGGAGACCAGCCCGGAAGAGCCCGTCGACGACAGTCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAACTGCCGGTAGATACCACCTGGGAAGATGTCTATTCAGCCGGCACAGCCCAGAGCGCAGGCCCCATCCACGATGG
AGAGGACAGCGTCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATCTGGATGCCGCCATTGCGCTGGCCATCATAGATGCCATCGATGACTCCGGTTATCTGACCGTCTCTCTCGAAGAT
ATACAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGACGAGGTCGAGGCAGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTTGGCCAGTACGCTCCTGAACTGCCCT
GGCTCAATGAGGCCAGGGAGGTGATCAAGGAGCACATGGATCTGCTCGGCAACCGTGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTCAAGGAGAGTGATCTCAAGGAGGTGCTGGACCTTATCCAGCAACTGGAGCCCAGGCCGGGTAACGGCATCAT
ACAGAGTGACTCCCAGTACGTGATCCCGGATGTCACCGTCGTCAAGAAGGGCAACAAATGGGTCGTCGAACTCAACCCGG
ATTCTGCACCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCGCGTACTAGCCAGGATACCCAGTTC
ATTCGCTCCCACTTGCAAGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCGAC
CTGTATTGTCGAGCAACAACAGGGCTTTTTCGAGTATGGTGAAGAAGCCATGAAGCCCATGGTGCTCAACGATATCGCCG
AGGCGGTGGAGATGCATGAGTCGACCATTTCCAGGGTAACGACCCAGAAATACATGCATACCCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAACACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTGACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.776

100

0.486