Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OKW98_RS25160 Genome accession   NZ_CP110644
Coordinates   5672354..5673721 (-) Length   455 a.a.
NCBI ID   WP_074888638.1    Uniprot ID   A0A1I0DW53
Organism   Pseudomonas sp. KU26590     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5667354..5678721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS25140 (OKW98_25145) yjiA 5668341..5669318 (-) 978 WP_265387129.1 GTPase -
  OKW98_RS25145 (OKW98_25150) - 5669528..5669725 (-) 198 WP_065987541.1 YbdD/YjiX family protein -
  OKW98_RS25150 (OKW98_25155) - 5669752..5671821 (-) 2070 WP_265387130.1 carbon starvation CstA family protein -
  OKW98_RS25155 (OKW98_25160) - 5671974..5672342 (+) 369 WP_265387131.1 PilZ domain-containing protein -
  OKW98_RS25160 (OKW98_25165) radA 5672354..5673721 (-) 1368 WP_074888638.1 DNA repair protein RadA Machinery gene
  OKW98_RS25165 (OKW98_25170) mscL 5673921..5674370 (+) 450 WP_265387132.1 large-conductance mechanosensitive channel protein MscL -
  OKW98_RS25170 (OKW98_25175) - 5674537..5675313 (-) 777 WP_265387133.1 ferredoxin--NADP reductase -
  OKW98_RS25175 (OKW98_25180) - 5675702..5675881 (+) 180 WP_265389834.1 LuxR C-terminal-related transcriptional regulator -
  OKW98_RS25180 (OKW98_25185) - 5676041..5677165 (+) 1125 WP_265387134.1 methyltransferase -
  OKW98_RS25185 (OKW98_25190) - 5677250..5677444 (-) 195 WP_265387135.1 DUF2474 domain-containing protein -
  OKW98_RS25190 (OKW98_25195) cydB 5677502..5678509 (-) 1008 WP_265387136.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48744.10 Da        Isoelectric Point: 6.6101

>NTDB_id=755601 OKW98_RS25160 WP_074888638.1 5672354..5673721(-) (radA) [Pseudomonas sp. KU26590]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLVETVIDNSTAAAPSGRSGWTGQQAQIKTLAEVSVEEIPRFSTNSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIAERMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TARIEQPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVAGSVVMATWEGTRPMLVEVQALVDDSHLS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRALPGDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLTVIGVTRLDQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=755601 OKW98_RS25160 WP_074888638.1 5672354..5673721(-) (radA) [Pseudomonas sp. KU26590]
ATGGCCAAGGCCAAACGCATGTACGGCTGCACCGAGTGCGGCTCGACGTTTCCCAAATGGGCCGGCCAGTGCAGCGAATG
CGGCGCCTGGAACACCCTCGTTGAAACCGTGATCGACAACAGCACGGCGGCGGCGCCCAGCGGTCGTTCCGGCTGGACCG
GCCAACAGGCACAGATCAAAACCCTGGCCGAAGTCAGTGTCGAAGAAATCCCGCGTTTCTCCACCAACTCCACTGAACTT
GACCGCGTCCTCGGCGGCGGCCTTGTGGATGGCTCGGTGGTGTTGATCGGCGGCGACCCCGGCATCGGTAAGTCGACCAT
TCTGTTGCAGACCCTCTGCGCCATCGCCGAGCGCATGCCGGCGCTGTACGTCACCGGCGAAGAGTCGCAGCAGCAGGTTG
CGATGCGTGCCCGTCGGCTCGGCTTGCCCCAGGACAAACTGCGGGTCATGACCGAGACCTGCATCGAAACCATCATTGCC
ACGGCGCGCATCGAGCAACCGAAGGTCATGGTGATCGACTCGATCCAGACCATCTTTACCGAACAGCTGCAGTCAGCGCC
CGGCGGCGTCTCCCAAGTCCGAGAGAGTGCTGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACCGCGATCTTTCTGG
TAGGCCACGTCACCAAAGAAGGCGCGCTGGCCGGGCCTCGCGTGCTGGAGCACATGGTCGACACCGTGTTGTATTTCGAG
GGCGAGTCCGACGGCCGCCTGCGTTTGCTGCGCGCAGTGAAAAACCGCTTCGGTGCCGTCAACGAGCTGGGCGTCTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCGAACCCTTCGGCGATTTTTCTCACACGAGCGCAGGAAGAAGTCGCGGGTA
GCGTGGTCATGGCTACATGGGAGGGCACCCGGCCGATGCTGGTCGAGGTGCAGGCATTGGTCGATGACAGCCATCTGTCC
AACCCGCGTCGCGTCACCTTGGGGCTGGATCAGAATCGGTTGGCCATGCTGCTGGCCGTGCTGCATCGCCACGGCGGCAT
CCCCACCCATGACCAAGACGTGTTTCTCAACGTCGTCGGCGGGGTGAAAGTGCTGGAAACCGCTTCCGACCTGGCCCTGA
TGGCCGCCGTCATGTCCAGCCTGCGCAACCGTGCGCTGCCAGGCGACTTGCTGGTATTCGGCGAAGTGGGCTTGTCGGGC
GAAGTACGGCCCGTGCCCAGTGGTCAGGAGCGACTCAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
AGGCAACGCCCCGAAAGAGTCGCCGCCGGGCTTGACGGTGATTGGCGTGACGCGCCTCGATCAAGCGCTGGACGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I0DW53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.623

100

0.47
  radA Streptococcus pneumoniae R6

46.623

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.623

100

0.47
  radA Streptococcus pneumoniae D39

46.623

100

0.47
  radA Streptococcus mitis SK321

46.813

100

0.468
  radA Streptococcus mitis NCTC 12261

46.593

100

0.466