Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QJP97_RS19965 Genome accession   NZ_CP124374
Coordinates   4038562..4039800 (+) Length   412 a.a.
NCBI ID   WP_135830794.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0578     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4033562..4044800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP97_RS19950 (QJP97_19950) - 4034077..4035753 (+) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -
  QJP97_RS19955 (QJP97_19955) kdsB 4035763..4036503 (+) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QJP97_RS19960 (QJP97_19960) - 4036500..4038527 (+) 2028 WP_135830793.1 capsular polysaccharide biosynthesis protein -
  QJP97_RS19965 (QJP97_19965) kpsS 4038562..4039800 (+) 1239 WP_135830794.1 capsular biosynthesis protein Regulator
  QJP97_RS19970 (QJP97_19970) - 4039849..4040838 (-) 990 WP_000028051.1 hypothetical protein -
  QJP97_RS19975 (QJP97_19975) - 4040957..4044466 (-) 3510 WP_039720365.1 hypothetical protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 49182.96 Da        Isoelectric Point: 10.2003

>NTDB_id=755576 QJP97_RS19965 WP_135830794.1 4038562..4039800(+) (kpsS) [Escherichia coli strain AVS0578]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLERNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNAVYYGDRVRKQIKVK
KIITMNDIKTSS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=755576 QJP97_RS19965 WP_135830794.1 4038562..4039800(+) (kpsS) [Escherichia coli strain AVS0578]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGAACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGATGAAGACCCAGGTTAATGCGGTTTATTATGGGGATAGAGTAAGAAAACAAATAAAAGTAAAA
AAAATTATAACTATGAACGATATAAAAACCAGCTCTTAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

94.903

0.376