Detailed information NTG0755571

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP97_RS18390
• Genome accession: NZ_CP124374
• Coordinates: 3697496..3698488 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0578
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3692496..3703488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP97_RS18370 (QJP97_18370)	ygbM	3693134..3693910 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP97_RS18375 (QJP97_18375)	ygbN	3693999..3695363 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP97_RS18380 (QJP97_18380)	-	3695506..3696549 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP97_RS18385 (QJP97_18385)	-	3696774..3697325 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP97_RS18390 (QJP97_18390)	rpoS	3697496..3698488 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP97_RS18395 (QJP97_18395)	nlpD	3698551..3699645 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP97_RS18400 (QJP97_18400)	pcm	3699830..3700456 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP97_RS18405 (QJP97_18405)	surE	3700450..3701211 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP97_RS18410 (QJP97_18410)	truD	3701192..3702241 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP97_RS18415 (QJP97_18415)	ispF	3702238..3702717 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP97_RS18420 (QJP97_18420)	ispD	3702717..3703427 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=755571 QJP97_RS18390 WP_000081550.1 3697496..3698488(-) (rpoS) [Escherichia coli strain AVS0578]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=755571 QJP97_RS18390 WP_000081550.1 3697496..3698488(-) (rpoS) [Escherichia coli strain AVS0578]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715