Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   OOZ27_RS16055 Genome accession   NZ_CP110634
Coordinates   2975542..2976288 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain MG-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2970542..2981288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS16025 (OOZ27_16025) - 2970870..2971304 (+) 435 WP_069839654.1 helix-turn-helix domain-containing protein -
  OOZ27_RS16030 (OOZ27_16030) - 2971318..2971764 (+) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  OOZ27_RS16035 (OOZ27_16035) - 2971795..2973231 (+) 1437 WP_164906785.1 recombinase family protein -
  OOZ27_RS16040 (OOZ27_16040) radC 2973244..2973651 (-) 408 Protein_3117 RadC family protein -
  OOZ27_RS16045 (OOZ27_16045) maf 2973688..2974257 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  OOZ27_RS16050 (OOZ27_16050) spoIIB 2974410..2975408 (-) 999 WP_015714459.1 stage II sporulation protein SpoIIB -
  OOZ27_RS16055 (OOZ27_16055) comC 2975542..2976288 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  OOZ27_RS16060 (OOZ27_16060) folC 2976428..2977720 (-) 1293 WP_015714460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  OOZ27_RS16065 (OOZ27_16065) valS 2977780..2980422 (-) 2643 WP_015714461.1 valine--tRNA ligase -
  OOZ27_RS16070 (OOZ27_16070) - 2980870..2981061 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=755519 OOZ27_RS16055 WP_072592551.1 2975542..2976288(-) (comC) [Bacillus subtilis strain MG-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=755519 OOZ27_RS16055 WP_072592551.1 2975542..2976288(-) (comC) [Bacillus subtilis strain MG-1]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996