Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OOZ27_RS12600 Genome accession   NZ_CP110634
Coordinates   2378845..2379465 (+) Length   206 a.a.
NCBI ID   WP_015714153.1    Uniprot ID   A0A8E0VT51
Organism   Bacillus subtilis strain MG-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2373845..2384465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS12560 (OOZ27_12560) ptsA 2374976..2375482 (-) 507 WP_015483368.1 PTS sugar transporter subunit IIA -
  OOZ27_RS12565 (OOZ27_12565) ypqA 2375620..2376039 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  OOZ27_RS12570 (OOZ27_12570) sppG 2376060..2376437 (-) 378 WP_014477159.1 YppG family protein -
  OOZ27_RS12575 (OOZ27_12575) yppF 2376625..2376813 (+) 189 WP_003230690.1 YppF family protein -
  OOZ27_RS12580 (OOZ27_12580) yppE 2376852..2377223 (-) 372 WP_015714151.1 YppE family protein -
  OOZ27_RS12585 (OOZ27_12585) yppD 2377269..2377514 (-) 246 WP_015251831.1 YppD family protein -
  OOZ27_RS12590 (OOZ27_12590) sspM 2377713..2377817 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  OOZ27_RS12595 (OOZ27_12595) yppC 2377842..2378804 (-) 963 WP_003230679.1 DUF2515 domain-containing protein -
  OOZ27_RS12600 (OOZ27_12600) recU 2378845..2379465 (+) 621 WP_015714153.1 Holliday junction resolvase RecU Machinery gene
  OOZ27_RS12605 (OOZ27_12605) ponA 2379487..2382231 (+) 2745 WP_003230676.1 transglycosylase domain-containing protein -
  OOZ27_RS12610 (OOZ27_12610) ypoC 2382307..2382801 (-) 495 WP_015714154.1 YpoC family protein -
  OOZ27_RS12615 (OOZ27_12615) nth 2382798..2383457 (-) 660 WP_009967580.1 endonuclease III -
  OOZ27_RS12620 (OOZ27_12620) dnaD 2383476..2384174 (-) 699 WP_015714155.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23915.08 Da        Isoelectric Point: 9.7224

>NTDB_id=755499 OOZ27_RS12600 WP_015714153.1 2378845..2379465(+) (recU) [Bacillus subtilis strain MG-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHAHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=755499 OOZ27_RS12600 WP_015714153.1 2378845..2379465(+) (recU) [Bacillus subtilis strain MG-1]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGCCCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995