Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   OOZ27_RS08250 Genome accession   NZ_CP110634
Coordinates   1526580..1527044 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain MG-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1521580..1532044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS08230 (OOZ27_08230) kinA 1522047..1523867 (+) 1821 WP_015715804.1 sporulation histidine kinase KinA -
  OOZ27_RS08235 (OOZ27_08235) dapX 1523877..1525058 (-) 1182 WP_014476653.1 aminotransferase A -
  OOZ27_RS08240 (OOZ27_08240) - 1525260..1525421 (-) 162 WP_003245246.1 hypothetical protein -
  OOZ27_RS08245 (OOZ27_08245) cheV 1525625..1526536 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  OOZ27_RS08250 (OOZ27_08250) kre 1526580..1527044 (-) 465 WP_003232406.1 YkyB family protein Regulator
  OOZ27_RS08255 (OOZ27_08255) ykuC 1527170..1528462 (-) 1293 WP_003245267.1 MFS transporter -
  OOZ27_RS08260 (OOZ27_08260) ltdD 1528538..1529032 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  OOZ27_RS08265 (OOZ27_08265) ppeE 1529089..1529949 (-) 861 WP_003232400.1 metallophosphoesterase -
  OOZ27_RS08270 (OOZ27_08270) fadH 1530092..1530856 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=755491 OOZ27_RS08250 WP_003232406.1 1526580..1527044(-) (kre) [Bacillus subtilis strain MG-1]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=755491 OOZ27_RS08250 WP_003232406.1 1526580..1527044(-) (kre) [Bacillus subtilis strain MG-1]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1