Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   OOZ27_RS06290 Genome accession   NZ_CP110634
Coordinates   1166448..1167026 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain MG-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1161448..1172026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS23180 - 1161959..1162474 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  OOZ27_RS23185 - 1162715..1163341 (-) 627 Protein_1169 protoglobin domain-containing protein -
  OOZ27_RS06275 (OOZ27_06275) comW 1163396..1164925 (-) 1530 WP_015715629.1 FAD-dependent oxidoreductase -
  OOZ27_RS06280 (OOZ27_06280) yhxC 1165037..1165894 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  OOZ27_RS06285 (OOZ27_06285) yhzC 1165922..1166155 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  OOZ27_RS06290 (OOZ27_06290) comK 1166448..1167026 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  OOZ27_RS06295 (OOZ27_06295) yhxD 1167073..1167972 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  OOZ27_RS06300 (OOZ27_06300) yhjA 1168189..1168458 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  OOZ27_RS06305 (OOZ27_06305) yhjB 1168501..1169970 (-) 1470 WP_003233134.1 sodium:solute symporter family protein -
  OOZ27_RS06310 (OOZ27_06310) yhjC 1169967..1170167 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  OOZ27_RS06315 (OOZ27_06315) - 1170375..1170737 (-) 363 WP_003233132.1 hypothetical protein -
  OOZ27_RS06320 (OOZ27_06320) yhjE 1170889..1171512 (+) 624 WP_003233130.1 TVP38/TMEM64 family protein -
  OOZ27_RS06325 (OOZ27_06325) lepB 1171514..1172020 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=755479 OOZ27_RS06290 WP_003245329.1 1166448..1167026(+) (comK) [Bacillus subtilis strain MG-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=755479 OOZ27_RS06290 WP_003245329.1 1166448..1167026(+) (comK) [Bacillus subtilis strain MG-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1