Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OOZ27_RS02355 Genome accession   NZ_CP110634
Coordinates   425305..425754 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain MG-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 420305..430754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS02320 (OOZ27_02320) yckA 420578..421258 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  OOZ27_RS02325 (OOZ27_02325) yckB 421268..422131 (-) 864 WP_015715225.1 transporter substrate-binding domain-containing protein -
  OOZ27_RS02330 (OOZ27_02330) - 422293..422488 (+) 196 Protein_416 hypothetical protein -
  OOZ27_RS02335 (OOZ27_02335) - 422495..422842 (+) 348 WP_003234619.1 RDD family protein -
  OOZ27_RS02340 (OOZ27_02340) yckD 422924..423256 (+) 333 WP_015252849.1 YckD family protein -
  OOZ27_RS02345 (OOZ27_02345) bglC 423410..424843 (+) 1434 WP_003234614.1 6-phospho-beta-glucosidase -
  OOZ27_RS02350 (OOZ27_02350) nin/comJ 424880..425278 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  OOZ27_RS02355 (OOZ27_02355) nucA/comI 425305..425754 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  OOZ27_RS02360 (OOZ27_02360) tlpC 425922..427643 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  OOZ27_RS02365 (OOZ27_02365) hxlB 427754..428311 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  OOZ27_RS02370 (OOZ27_02370) hxlA 428317..428949 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  OOZ27_RS02375 (OOZ27_02375) hxlR 429182..429544 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=755469 OOZ27_RS02355 WP_003234608.1 425305..425754(-) (nucA/comI) [Bacillus subtilis strain MG-1]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=755469 OOZ27_RS02355 WP_003234608.1 425305..425754(-) (nucA/comI) [Bacillus subtilis strain MG-1]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98