Detailed information NTG0755370

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP75_RS07655
• Genome accession: NZ_CP124367
• Coordinates: 1547565..1548557 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0465
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1542565..1553557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP75_RS07635 (QJP75_07635)	ygbM	1543203..1543979 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP75_RS07640 (QJP75_07640)	ygbN	1544068..1545432 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP75_RS07645 (QJP75_07645)	-	1545575..1546618 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP75_RS07650 (QJP75_07650)	-	1546843..1547394 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP75_RS07655 (QJP75_07655)	rpoS	1547565..1548557 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP75_RS07660 (QJP75_07660)	nlpD	1548620..1549714 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP75_RS07665 (QJP75_07665)	pcm	1549899..1550525 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP75_RS07670 (QJP75_07670)	surE	1550519..1551280 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP75_RS07675 (QJP75_07675)	truD	1551261..1552310 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP75_RS07680 (QJP75_07680)	ispF	1552307..1552786 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP75_RS07685 (QJP75_07685)	ispD	1552786..1553496 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=755370 QJP75_RS07655 WP_000081550.1 1547565..1548557(-) (rpoS) [Escherichia coli strain AVS0465]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=755370 QJP75_RS07655 WP_000081550.1 1547565..1548557(-) (rpoS) [Escherichia coli strain AVS0465]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715