Detailed information NTG0755343

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: OO001_RS06080
• Genome accession: NZ_CP110611
• Coordinates: 1268039..1269013 (+)
• Length: 324 a.a.
• NCBI ID: WP_001831109.1
• Uniprot ID: A0A9Q5JKD6
• Organism: Staphylococcus epidermidis strain CCSM0287
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1263039..1274013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO001_RS06045	rpmG	1263519..1263668 (+)	150	WP_001830957.1	50S ribosomal protein L33	-
OO001_RS06050	-	1263851..1264402 (+)	552	WP_001831001.1	5-formyltetrahydrofolate cyclo-ligase	-
OO001_RS06055	-	1264403..1265863 (+)	1461	WP_001832757.1	rhomboid family intramembrane serine protease	-
OO001_RS06060	-	1265847..1266047 (+)	201	WP_001831138.1	YqgQ family protein	-
OO001_RS06065	-	1266047..1267033 (+)	987	WP_001831113.1	ROK family glucokinase	-
OO001_RS06070	-	1267033..1267359 (+)	327	WP_001831234.1	MTH1187 family thiamine-binding protein	-
OO001_RS06075	-	1267359..1267982 (+)	624	WP_001831016.1	MBL fold metallo-hydrolase	-
OO001_RS06080	comGA	1268039..1269013 (+)	975	WP_001831109.1	competence type IV pilus ATPase ComGA	Machinery gene
OO001_RS06085	comGB	1268985..1270052 (+)	1068	WP_001831131.1	competence type IV pilus assembly protein ComGB	Machinery gene
OO001_RS06090	comGC	1270070..1270387 (+)	318	WP_001831271.1	competence type IV pilus major pilin ComGC	Machinery gene
OO001_RS06095	comGD	1270377..1270814 (+)	438	WP_001831025.1	competence type IV pilus minor pilin ComGD	-
OO001_RS06100	-	1270801..1271094 (+)	294	WP_001831116.1	hypothetical protein	-
OO001_RS06105	-	1271018..1271509 (+)	492	WP_002440043.1	competence type IV pilus minor pilin ComGF	-
OO001_RS06110	-	1271674..1272186 (+)	513	WP_002440040.1	shikimate kinase	-
OO001_RS06115	gcvT	1272404..1273495 (+)	1092	WP_001831107.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37330.44 Da
• Isoelectric Point: 8.8174

>NTDB_id=755343 OO001_RS06080 WP_001831109.1 1268039..1269013(+) (comGA) [Staphylococcus epidermidis strain CCSM0287]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=755343 OO001_RS06080 WP_001831109.1 1268039..1269013(+) (comGA) [Staphylococcus epidermidis strain CCSM0287]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (7-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	70.062	100	0.701
comGA	Staphylococcus aureus N315	70.062	100	0.701