Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OM420_RS07435 Genome accession   NZ_CP110534
Coordinates   1598110..1598736 (+) Length   208 a.a.
NCBI ID   WP_008499926.1    Uniprot ID   A0AAX1WHW5
Organism   Enterobacter roggenkampii strain WS28-4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593110..1603736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM420_RS07415 (OM420_07410) - 1593509..1595269 (-) 1761 WP_094943696.1 Lon protease family protein -
  OM420_RS07420 (OM420_07415) matP 1595456..1595908 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  OM420_RS07425 (OM420_07420) ompA 1595973..1597028 (-) 1056 WP_023292865.1 porin OmpA -
  OM420_RS07430 (OM420_07425) sulA 1597383..1597892 (-) 510 WP_094943693.1 SOS-induced cell division inhibitor SulA -
  OM420_RS07435 (OM420_07430) sxy/tfoX 1598110..1598736 (+) 627 WP_008499926.1 TfoX/Sxy family DNA transformation protein Regulator
  OM420_RS07440 (OM420_07435) yccS 1598693..1600855 (-) 2163 WP_032651202.1 YccS family putative transporter -
  OM420_RS07445 (OM420_07440) - 1600875..1601321 (-) 447 WP_008499924.1 YccF domain-containing protein -
  OM420_RS07450 (OM420_07445) helD 1601445..1603499 (+) 2055 WP_094943690.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23885.49 Da        Isoelectric Point: 9.6439

>NTDB_id=755240 OM420_RS07435 WP_008499926.1 1598110..1598736(+) (sxy/tfoX) [Enterobacter roggenkampii strain WS28-4]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=755240 OM420_RS07435 WP_008499926.1 1598110..1598736(+) (sxy/tfoX) [Enterobacter roggenkampii strain WS28-4]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGCTACACCCTGGCGGTGGATGATGCGGTCTTTGCCATGGTGTCTGATGGCGAACTTTATCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTACTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTTTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAGGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCAATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567